Hb_000270_620

Information

Type -
Description -
Location Contig270: 508297-511249
Sequence    

Annotation

kegg
ID pop:POPTR_0704s00200g
description hypothetical protein
nr
ID XP_012080125.1
description PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
swissprot
ID Q3E870
description Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana GN=SDH7B PE=1 SV=1
trembl
ID D7SHW9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g07810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_620 0.0 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
2 Hb_000103_550 0.1070424381 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
3 Hb_000123_160 0.1280040845 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
4 Hb_000318_490 0.137833253 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
5 Hb_004159_050 0.1453041156 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000920_320 0.1454999756 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
7 Hb_004545_130 0.1519361816 - - uncharacterized protein LOC100305465 [Glycine max]
8 Hb_000431_160 0.1542378723 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
9 Hb_001396_090 0.1568665418 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
10 Hb_003913_050 0.1570596059 - - 60S ribosomal protein L27B [Hevea brasiliensis]
11 Hb_000617_110 0.1573142219 - - translationally controlled tumor protein [Hevea brasiliensis]
12 Hb_003060_040 0.1576340966 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
13 Hb_027892_040 0.1580440294 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
14 Hb_006351_110 0.1582613969 - - -
15 Hb_004333_030 0.158880727 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
16 Hb_001776_170 0.159005327 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001052_030 0.1590200691 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
18 Hb_000592_060 0.1618209928 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
19 Hb_001511_140 0.1619258331 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
20 Hb_003095_070 0.1644165816 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]

Gene co-expression network

sample Hb_000270_620 Hb_000270_620 Hb_000103_550 Hb_000103_550 Hb_000270_620--Hb_000103_550 Hb_000123_160 Hb_000123_160 Hb_000270_620--Hb_000123_160 Hb_000318_490 Hb_000318_490 Hb_000270_620--Hb_000318_490 Hb_004159_050 Hb_004159_050 Hb_000270_620--Hb_004159_050 Hb_000920_320 Hb_000920_320 Hb_000270_620--Hb_000920_320 Hb_004545_130 Hb_004545_130 Hb_000270_620--Hb_004545_130 Hb_000103_550--Hb_000318_490 Hb_001159_200 Hb_001159_200 Hb_000103_550--Hb_001159_200 Hb_003095_070 Hb_003095_070 Hb_000103_550--Hb_003095_070 Hb_006351_110 Hb_006351_110 Hb_000103_550--Hb_006351_110 Hb_001396_090 Hb_001396_090 Hb_000103_550--Hb_001396_090 Hb_062135_020 Hb_062135_020 Hb_000123_160--Hb_062135_020 Hb_000976_250 Hb_000976_250 Hb_000123_160--Hb_000976_250 Hb_146225_010 Hb_146225_010 Hb_000123_160--Hb_146225_010 Hb_000123_160--Hb_000318_490 Hb_000236_150 Hb_000236_150 Hb_000123_160--Hb_000236_150 Hb_000001_070 Hb_000001_070 Hb_000123_160--Hb_000001_070 Hb_001369_400 Hb_001369_400 Hb_000318_490--Hb_001369_400 Hb_030565_040 Hb_030565_040 Hb_000318_490--Hb_030565_040 Hb_000318_490--Hb_000976_250 Hb_004333_030 Hb_004333_030 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_004159_050--Hb_006351_110 Hb_183612_080 Hb_183612_080 Hb_004159_050--Hb_183612_080 Hb_004159_050--Hb_000103_550 Hb_004159_050--Hb_000920_320 Hb_000617_110 Hb_000617_110 Hb_004159_050--Hb_000617_110 Hb_003913_050 Hb_003913_050 Hb_000920_320--Hb_003913_050 Hb_000920_320--Hb_001396_090 Hb_003226_240 Hb_003226_240 Hb_000920_320--Hb_003226_240 Hb_003060_040 Hb_003060_040 Hb_000920_320--Hb_003060_040 Hb_002989_040 Hb_002989_040 Hb_000920_320--Hb_002989_040 Hb_000635_080 Hb_000635_080 Hb_004545_130--Hb_000635_080 Hb_004545_130--Hb_001377_380 Hb_004545_130--Hb_000617_110 Hb_000431_160 Hb_000431_160 Hb_004545_130--Hb_000431_160 Hb_004735_050 Hb_004735_050 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2174 0.886236 1.23739 1.26469 0.435234 4.30547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4629 40.1906 17.6847 4.58625 0.334418

CAGE analysis