Hb_000270_640

Information

Type -
Description -
Location Contig270: 521458-522934
Sequence    

Annotation

kegg
ID rcu:RCOM_1511980
description hypothetical protein
nr
ID XP_006376838.1
description hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUB2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07880g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28248: 521557-522921
cDNA
(Sanger)
(ID:Location)		 036_J05.ab1: 521730-522921 , 051_H20.ab1: 521719-522921

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_640 0.0 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
2 Hb_000705_040 0.0736966471 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001541_280 0.0821011605 - - phosphate transporter [Manihot esculenta]
4 Hb_000968_010 0.0842916181 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
5 Hb_000373_010 0.0872407619 - - ATP binding protein, putative [Ricinus communis]
6 Hb_002636_070 0.0902684821 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
7 Hb_004979_070 0.0923235869 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
8 Hb_007718_030 0.0942335909 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_000680_130 0.0943889889 - - beta-galactosidase, putative [Ricinus communis]
10 Hb_000608_290 0.0950500361 - - thioredoxin f-type, putative [Ricinus communis]
11 Hb_016924_010 0.0975739736 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002943_020 0.0982228918 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
13 Hb_096224_050 0.09833366 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
14 Hb_004291_050 0.0992276749 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
15 Hb_000140_460 0.0992730112 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
16 Hb_029223_010 0.0995542048 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
17 Hb_002073_150 0.099577761 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
18 Hb_022693_080 0.1011889158 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
19 Hb_000644_010 0.1013395464 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
20 Hb_001248_070 0.1020607387 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_640 Hb_000270_640 Hb_000705_040 Hb_000705_040 Hb_000270_640--Hb_000705_040 Hb_001541_280 Hb_001541_280 Hb_000270_640--Hb_001541_280 Hb_000968_010 Hb_000968_010 Hb_000270_640--Hb_000968_010 Hb_000373_010 Hb_000373_010 Hb_000270_640--Hb_000373_010 Hb_002636_070 Hb_002636_070 Hb_000270_640--Hb_002636_070 Hb_004979_070 Hb_004979_070 Hb_000270_640--Hb_004979_070 Hb_002943_020 Hb_002943_020 Hb_000705_040--Hb_002943_020 Hb_001248_070 Hb_001248_070 Hb_000705_040--Hb_001248_070 Hb_000680_130 Hb_000680_130 Hb_000705_040--Hb_000680_130 Hb_002073_150 Hb_002073_150 Hb_000705_040--Hb_002073_150 Hb_029223_010 Hb_029223_010 Hb_000705_040--Hb_029223_010 Hb_000847_030 Hb_000847_030 Hb_001541_280--Hb_000847_030 Hb_002814_010 Hb_002814_010 Hb_001541_280--Hb_002814_010 Hb_020141_030 Hb_020141_030 Hb_001541_280--Hb_020141_030 Hb_000140_460 Hb_000140_460 Hb_001541_280--Hb_000140_460 Hb_000002_300 Hb_000002_300 Hb_001541_280--Hb_000002_300 Hb_003141_060 Hb_003141_060 Hb_000968_010--Hb_003141_060 Hb_011104_020 Hb_011104_020 Hb_000968_010--Hb_011104_020 Hb_000968_010--Hb_000680_130 Hb_001579_060 Hb_001579_060 Hb_000968_010--Hb_001579_060 Hb_000968_010--Hb_000373_010 Hb_011028_030 Hb_011028_030 Hb_000373_010--Hb_011028_030 Hb_002155_020 Hb_002155_020 Hb_000373_010--Hb_002155_020 Hb_000644_010 Hb_000644_010 Hb_000373_010--Hb_000644_010 Hb_000373_010--Hb_000680_130 Hb_002407_090 Hb_002407_090 Hb_000373_010--Hb_002407_090 Hb_096224_050 Hb_096224_050 Hb_000373_010--Hb_096224_050 Hb_002636_070--Hb_029223_010 Hb_002636_070--Hb_000680_130 Hb_002713_060 Hb_002713_060 Hb_002636_070--Hb_002713_060 Hb_002636_070--Hb_000705_040 Hb_027337_130 Hb_027337_130 Hb_002636_070--Hb_027337_130 Hb_007904_110 Hb_007904_110 Hb_004979_070--Hb_007904_110 Hb_004979_070--Hb_096224_050 Hb_004979_080 Hb_004979_080 Hb_004979_070--Hb_004979_080 Hb_025557_060 Hb_025557_060 Hb_004979_070--Hb_025557_060 Hb_119600_030 Hb_119600_030 Hb_004979_070--Hb_119600_030 Hb_004291_050 Hb_004291_050 Hb_004979_070--Hb_004291_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.741778 26.0013 55.2216 41.8175 0.913742 0.490573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0917532 0.288675 0.133506 13.4126 126.554

CAGE analysis