Hb_000270_670

Information

Type transcription factor
Description TF Family: IWS1
Location Contig270: 544200-564092
Sequence    

Annotation

kegg
ID rcu:RCOM_1511900
description DNA binding protein, putative
nr
ID XP_012080115.1
description PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RB66
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1511900 PE=4 SV=1
Gene Ontology
ID GO:0005634
description bah helical bundle-like domain isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28258: 544330-553844 , PASA_asmbl_28259: 545505-548176 , PASA_asmbl_28261: 556824-564074 , PASA_asmbl_28262: 557540-557725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_670 0.0 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
2 Hb_002316_150 0.0618735717 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
3 Hb_000172_110 0.064877021 - - -
4 Hb_007441_220 0.066551999 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
5 Hb_000866_120 0.0670471855 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
6 Hb_000890_050 0.0712236707 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
7 Hb_004143_130 0.0737914855 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
8 Hb_006718_020 0.0773861721 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
9 Hb_000574_400 0.0826279795 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
10 Hb_006649_050 0.083160647 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
11 Hb_002234_170 0.0841351891 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
12 Hb_002316_160 0.0852898017 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
13 Hb_003371_090 0.0859241155 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
14 Hb_000041_100 0.0871854432 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
15 Hb_002942_100 0.0871856361 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
16 Hb_002725_120 0.0875669565 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
17 Hb_001799_180 0.0892868168 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_000130_490 0.0903835872 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
19 Hb_009486_200 0.0920866155 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
20 Hb_015807_070 0.0929620133 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]

Gene co-expression network

sample Hb_000270_670 Hb_000270_670 Hb_002316_150 Hb_002316_150 Hb_000270_670--Hb_002316_150 Hb_000172_110 Hb_000172_110 Hb_000270_670--Hb_000172_110 Hb_007441_220 Hb_007441_220 Hb_000270_670--Hb_007441_220 Hb_000866_120 Hb_000866_120 Hb_000270_670--Hb_000866_120 Hb_000890_050 Hb_000890_050 Hb_000270_670--Hb_000890_050 Hb_004143_130 Hb_004143_130 Hb_000270_670--Hb_004143_130 Hb_006718_020 Hb_006718_020 Hb_002316_150--Hb_006718_020 Hb_002316_150--Hb_007441_220 Hb_002316_150--Hb_000866_120 Hb_002316_150--Hb_000172_110 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230 Hb_000172_110--Hb_000866_120 Hb_000130_490 Hb_000130_490 Hb_000172_110--Hb_000130_490 Hb_000230_500 Hb_000230_500 Hb_000172_110--Hb_000230_500 Hb_001999_090 Hb_001999_090 Hb_000172_110--Hb_001999_090 Hb_000041_100 Hb_000041_100 Hb_007441_220--Hb_000041_100 Hb_001085_060 Hb_001085_060 Hb_007441_220--Hb_001085_060 Hb_007441_220--Hb_001999_090 Hb_000245_040 Hb_000245_040 Hb_007441_220--Hb_000245_040 Hb_002007_160 Hb_002007_160 Hb_000866_120--Hb_002007_160 Hb_002798_070 Hb_002798_070 Hb_000866_120--Hb_002798_070 Hb_000866_120--Hb_000890_050 Hb_009767_080 Hb_009767_080 Hb_000890_050--Hb_009767_080 Hb_000890_050--Hb_004143_130 Hb_015807_070 Hb_015807_070 Hb_000890_050--Hb_015807_070 Hb_000318_390 Hb_000318_390 Hb_000890_050--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_000890_050--Hb_001967_030 Hb_000028_280 Hb_000028_280 Hb_004143_130--Hb_000028_280 Hb_002942_100 Hb_002942_100 Hb_004143_130--Hb_002942_100 Hb_003253_040 Hb_003253_040 Hb_004143_130--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_004143_130--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_004143_130--Hb_002740_110 Hb_004032_380 Hb_004032_380 Hb_004143_130--Hb_004032_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5087 31.7348 7.75861 13.5125 18.9999 22.319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.282 18.0791 36.2876 16.1275 25.5987

CAGE analysis