Hb_000270_680

Information

Type -
Description -
Location Contig270: 565126-570499
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08420g
description POPTRDRAFT_835152; hypothetical protein
nr
ID XP_002322155.2
description hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
swissprot
ID Q6Z808
description Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1
trembl
ID B9IEN7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08420g PE=3 SV=2
Gene Ontology
ID GO:0005622
description small gtpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28263: 565230-570625 , PASA_asmbl_28264: 565230-570625 , PASA_asmbl_28265: 569822-570129
cDNA
(Sanger)
(ID:Location)		 009_N16.ab1: 565479-570493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_680 0.0 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
2 Hb_000007_390 0.0571440738 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
3 Hb_000297_160 0.0638435275 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
4 Hb_000110_310 0.0686443591 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
5 Hb_107879_010 0.0709629877 - - phosphoglycerate mutase, putative [Ricinus communis]
6 Hb_003943_050 0.0714733846 - - phosphoglucomutase, putative [Ricinus communis]
7 Hb_001472_100 0.0732512446 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
8 Hb_000579_120 0.0736583814 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
9 Hb_000875_080 0.0782415911 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
10 Hb_000245_220 0.0824309375 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
11 Hb_000058_130 0.0844821733 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
12 Hb_001268_240 0.0857097364 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
13 Hb_000890_130 0.0885205514 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
14 Hb_011618_050 0.0901042025 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
15 Hb_000207_150 0.0921411928 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
16 Hb_001025_090 0.0924465366 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
17 Hb_002304_150 0.0927648543 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
18 Hb_000130_270 0.0932999861 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
19 Hb_007831_010 0.0933550614 - - PREDICTED: oligoribonuclease [Vitis vinifera]
20 Hb_009898_050 0.0938902052 - - PREDICTED: beta-taxilin [Jatropha curcas]

Gene co-expression network

sample Hb_000270_680 Hb_000270_680 Hb_000007_390 Hb_000007_390 Hb_000270_680--Hb_000007_390 Hb_000297_160 Hb_000297_160 Hb_000270_680--Hb_000297_160 Hb_000110_310 Hb_000110_310 Hb_000270_680--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_000270_680--Hb_107879_010 Hb_003943_050 Hb_003943_050 Hb_000270_680--Hb_003943_050 Hb_001472_100 Hb_001472_100 Hb_000270_680--Hb_001472_100 Hb_000007_390--Hb_003943_050 Hb_000007_390--Hb_000110_310 Hb_000787_060 Hb_000787_060 Hb_000007_390--Hb_000787_060 Hb_001268_240 Hb_001268_240 Hb_000007_390--Hb_001268_240 Hb_009898_050 Hb_009898_050 Hb_000007_390--Hb_009898_050 Hb_000875_080 Hb_000875_080 Hb_000297_160--Hb_000875_080 Hb_000336_210 Hb_000336_210 Hb_000297_160--Hb_000336_210 Hb_001959_110 Hb_001959_110 Hb_000297_160--Hb_001959_110 Hb_005144_090 Hb_005144_090 Hb_000297_160--Hb_005144_090 Hb_002272_050 Hb_002272_050 Hb_000297_160--Hb_002272_050 Hb_006153_070 Hb_006153_070 Hb_000110_310--Hb_006153_070 Hb_000110_310--Hb_009898_050 Hb_000579_120 Hb_000579_120 Hb_000110_310--Hb_000579_120 Hb_000110_310--Hb_001472_100 Hb_000110_310--Hb_001268_240 Hb_000227_170 Hb_000227_170 Hb_107879_010--Hb_000227_170 Hb_107879_010--Hb_001472_100 Hb_107879_010--Hb_000579_120 Hb_107879_010--Hb_000110_310 Hb_003513_010 Hb_003513_010 Hb_107879_010--Hb_003513_010 Hb_003119_090 Hb_003119_090 Hb_003943_050--Hb_003119_090 Hb_001186_090 Hb_001186_090 Hb_003943_050--Hb_001186_090 Hb_007007_040 Hb_007007_040 Hb_003943_050--Hb_007007_040 Hb_000737_030 Hb_000737_030 Hb_003943_050--Hb_000737_030 Hb_000976_120 Hb_000976_120 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_003207_180 Hb_003207_180 Hb_001472_100--Hb_003207_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8587 5.24942 21.7688 15.9286 10.39 10.2742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1635 14.473 7.86549 12.4631 11.9738

CAGE analysis