Hb_000270_700

Information

Type -
Description -
Location Contig270: 575345-580781
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08440g
description POPTRDRAFT_251989; hypothetical protein
nr
ID XP_011028602.1
description PREDICTED: protease Do-like 9 [Populus euphratica]
swissprot
ID Q9FL12
description Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=1 SV=1
trembl
ID B9IEN8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08440g PE=4 SV=2
Gene Ontology
ID GO:0004252
description protease do-like 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28267: 575442-580782 , PASA_asmbl_28268: 577884-578186 , PASA_asmbl_28269: 578205-578452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_700 0.0 - - PREDICTED: protease Do-like 9 [Populus euphratica]
2 Hb_000034_110 0.0539312274 - - sentrin/sumo-specific protease, putative [Ricinus communis]
3 Hb_000418_050 0.0586935068 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
4 Hb_002686_410 0.0637666097 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
5 Hb_005885_030 0.0672452585 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_003725_010 0.0711444009 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
7 Hb_000421_110 0.0717490459 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
8 Hb_001133_090 0.0724089287 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
9 Hb_013358_060 0.0785189818 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
10 Hb_000956_040 0.0793945331 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
11 Hb_002107_100 0.0797805985 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
12 Hb_010775_010 0.0851509753 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
13 Hb_006794_020 0.0857363981 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
14 Hb_000015_200 0.0874701223 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
15 Hb_004375_110 0.0884125967 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
16 Hb_003018_030 0.0894433593 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
17 Hb_009178_010 0.0895177747 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
18 Hb_003964_110 0.0911118945 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
19 Hb_000796_120 0.0921564448 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
20 Hb_000172_360 0.0922682218 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]

Gene co-expression network

sample Hb_000270_700 Hb_000270_700 Hb_000034_110 Hb_000034_110 Hb_000270_700--Hb_000034_110 Hb_000418_050 Hb_000418_050 Hb_000270_700--Hb_000418_050 Hb_002686_410 Hb_002686_410 Hb_000270_700--Hb_002686_410 Hb_005885_030 Hb_005885_030 Hb_000270_700--Hb_005885_030 Hb_003725_010 Hb_003725_010 Hb_000270_700--Hb_003725_010 Hb_000421_110 Hb_000421_110 Hb_000270_700--Hb_000421_110 Hb_000956_040 Hb_000956_040 Hb_000034_110--Hb_000956_040 Hb_000260_760 Hb_000260_760 Hb_000034_110--Hb_000260_760 Hb_009178_010 Hb_009178_010 Hb_000034_110--Hb_009178_010 Hb_000034_110--Hb_002686_410 Hb_005403_010 Hb_005403_010 Hb_000034_110--Hb_005403_010 Hb_001133_090 Hb_001133_090 Hb_000418_050--Hb_001133_090 Hb_000418_050--Hb_000421_110 Hb_000418_050--Hb_005885_030 Hb_000261_280 Hb_000261_280 Hb_000418_050--Hb_000261_280 Hb_002107_100 Hb_002107_100 Hb_000418_050--Hb_002107_100 Hb_002686_410--Hb_009178_010 Hb_002686_410--Hb_005885_030 Hb_009158_060 Hb_009158_060 Hb_002686_410--Hb_009158_060 Hb_000030_140 Hb_000030_140 Hb_002686_410--Hb_000030_140 Hb_010775_010 Hb_010775_010 Hb_005885_030--Hb_010775_010 Hb_002248_120 Hb_002248_120 Hb_005885_030--Hb_002248_120 Hb_006794_020 Hb_006794_020 Hb_005885_030--Hb_006794_020 Hb_005885_030--Hb_001133_090 Hb_013358_060 Hb_013358_060 Hb_003725_010--Hb_013358_060 Hb_024714_070 Hb_024714_070 Hb_003725_010--Hb_024714_070 Hb_012799_150 Hb_012799_150 Hb_003725_010--Hb_012799_150 Hb_000015_090 Hb_000015_090 Hb_003725_010--Hb_000015_090 Hb_017914_010 Hb_017914_010 Hb_003725_010--Hb_017914_010 Hb_000421_110--Hb_001133_090 Hb_007031_040 Hb_007031_040 Hb_000421_110--Hb_007031_040 Hb_001911_010 Hb_001911_010 Hb_000421_110--Hb_001911_010 Hb_004319_050 Hb_004319_050 Hb_000421_110--Hb_004319_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.53811 11.499 11.3814 7.09665 3.42298 2.27336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.849 2.04824 2.68506 6.76779 6.80466

CAGE analysis