Hb_000270_730

Information

Type -
Description -
Location Contig270: 602712-606637
Sequence    

Annotation

kegg
ID tcc:TCM_012016
description Ubiquitin-conjugating enzyme E2 5 isoform 1
nr
ID XP_012080106.1
description PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
swissprot
ID P42748
description Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2
trembl
ID A0A067K4I4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11507 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2-23 kda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28271: 599329-601895 , PASA_asmbl_28273: 602515-606597
cDNA
(Sanger)
(ID:Location)		 034_D19r.ab1: 599329-601929

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_730 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
2 Hb_001842_080 0.0965544854 - - -
3 Hb_000398_030 0.109450824 - - conserved hypothetical protein [Ricinus communis]
4 Hb_183612_080 0.1307616732 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
5 Hb_001922_080 0.1428498901 - - Tellurite resistance protein tehA, putative [Ricinus communis]
6 Hb_000316_100 0.1464848711 - - protein with unknown function [Ricinus communis]
7 Hb_027892_040 0.1475562443 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
8 Hb_000853_240 0.1588551612 - - -
9 Hb_032202_250 0.1643087107 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
10 Hb_000617_110 0.16947982 - - translationally controlled tumor protein [Hevea brasiliensis]
11 Hb_010172_100 0.171161368 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
12 Hb_000696_220 0.1724263281 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
13 Hb_000032_350 0.1744389794 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001373_100 0.1790397302 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001842_120 0.1817659474 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_001101_010 0.184579619 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
17 Hb_000175_130 0.1851933064 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
18 Hb_001266_030 0.1855550821 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
19 Hb_000300_210 0.1867149982 - - gd2b, putative [Ricinus communis]
20 Hb_000329_660 0.1870804797 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000270_730 Hb_000270_730 Hb_001842_080 Hb_001842_080 Hb_000270_730--Hb_001842_080 Hb_000398_030 Hb_000398_030 Hb_000270_730--Hb_000398_030 Hb_183612_080 Hb_183612_080 Hb_000270_730--Hb_183612_080 Hb_001922_080 Hb_001922_080 Hb_000270_730--Hb_001922_080 Hb_000316_100 Hb_000316_100 Hb_000270_730--Hb_000316_100 Hb_027892_040 Hb_027892_040 Hb_000270_730--Hb_027892_040 Hb_001842_080--Hb_001922_080 Hb_032202_250 Hb_032202_250 Hb_001842_080--Hb_032202_250 Hb_001842_080--Hb_000316_100 Hb_001842_080--Hb_183612_080 Hb_010172_100 Hb_010172_100 Hb_001842_080--Hb_010172_100 Hb_000398_030--Hb_001922_080 Hb_001799_040 Hb_001799_040 Hb_000398_030--Hb_001799_040 Hb_000398_030--Hb_001842_080 Hb_000032_350 Hb_000032_350 Hb_000398_030--Hb_000032_350 Hb_001373_100 Hb_001373_100 Hb_000398_030--Hb_001373_100 Hb_000617_110 Hb_000617_110 Hb_183612_080--Hb_000617_110 Hb_001842_120 Hb_001842_120 Hb_183612_080--Hb_001842_120 Hb_004159_050 Hb_004159_050 Hb_183612_080--Hb_004159_050 Hb_000613_170 Hb_000613_170 Hb_183612_080--Hb_000613_170 Hb_001922_080--Hb_010172_100 Hb_001922_080--Hb_000316_100 Hb_000544_110 Hb_000544_110 Hb_001922_080--Hb_000544_110 Hb_000175_130 Hb_000175_130 Hb_000316_100--Hb_000175_130 Hb_000316_100--Hb_010172_100 Hb_006351_110 Hb_006351_110 Hb_000316_100--Hb_006351_110 Hb_005908_040 Hb_005908_040 Hb_000316_100--Hb_005908_040 Hb_000316_100--Hb_027892_040 Hb_000045_210 Hb_000045_210 Hb_027892_040--Hb_000045_210 Hb_012053_010 Hb_012053_010 Hb_027892_040--Hb_012053_010 Hb_001266_030 Hb_001266_030 Hb_027892_040--Hb_001266_030 Hb_044653_060 Hb_044653_060 Hb_027892_040--Hb_044653_060 Hb_000431_160 Hb_000431_160 Hb_027892_040--Hb_000431_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7087 1.1132 3.07365 7.7359 2.98171 9.28346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.8953 190.305 25.0438 2.79539 1.80665

CAGE analysis