Hb_000270_780

Information

Type -
Description -
Location Contig270: 637523-643420
Sequence    

Annotation

kegg
ID rcu:RCOM_1511570
description trehalose-6-phosphate synthase, putative (EC:2.4.1.15 3.1.3.12)
nr
ID XP_012080097.1
description PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
swissprot
ID O80738
description Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1
trembl
ID A0A067KH16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11500 PE=4 SV=1
Gene Ontology
ID GO:0003825
description probable -trehalose-phosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28280: 637507-640321 , PASA_asmbl_28281: 640544-643016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_780 0.0 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
2 Hb_165350_010 0.0878975764 - - unnamed protein product [Triticum aestivum]
3 Hb_156850_030 0.0897941751 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
4 Hb_001728_100 0.0925299919 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
5 Hb_004204_080 0.0925526757 - - diacylglycerol kinase, theta, putative [Ricinus communis]
6 Hb_008643_060 0.0940724951 - - unnamed protein product [Coffea canephora]
7 Hb_001057_010 0.097105526 - - cation-transporting atpase plant, putative [Ricinus communis]
8 Hb_000861_070 0.0972416927 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005730_030 0.0991851498 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_002601_120 0.1016925569 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
11 Hb_006400_040 0.1018717507 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
12 Hb_000032_320 0.1040498793 - - protein binding protein, putative [Ricinus communis]
13 Hb_000352_090 0.1077122363 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
14 Hb_002701_080 0.1094926117 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
15 Hb_004678_020 0.1111258448 - - PREDICTED: protein YIF1B [Jatropha curcas]
16 Hb_011612_010 0.1118626981 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
17 Hb_012654_010 0.1121228935 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
18 Hb_000997_090 0.1121747284 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
19 Hb_010222_080 0.1127155473 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
20 Hb_000340_510 0.1141423027 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_780 Hb_000270_780 Hb_165350_010 Hb_165350_010 Hb_000270_780--Hb_165350_010 Hb_156850_030 Hb_156850_030 Hb_000270_780--Hb_156850_030 Hb_001728_100 Hb_001728_100 Hb_000270_780--Hb_001728_100 Hb_004204_080 Hb_004204_080 Hb_000270_780--Hb_004204_080 Hb_008643_060 Hb_008643_060 Hb_000270_780--Hb_008643_060 Hb_001057_010 Hb_001057_010 Hb_000270_780--Hb_001057_010 Hb_000861_070 Hb_000861_070 Hb_165350_010--Hb_000861_070 Hb_011612_010 Hb_011612_010 Hb_165350_010--Hb_011612_010 Hb_002508_020 Hb_002508_020 Hb_165350_010--Hb_002508_020 Hb_000592_080 Hb_000592_080 Hb_165350_010--Hb_000592_080 Hb_012193_010 Hb_012193_010 Hb_165350_010--Hb_012193_010 Hb_000032_320 Hb_000032_320 Hb_156850_030--Hb_000032_320 Hb_156850_030--Hb_001728_100 Hb_000953_010 Hb_000953_010 Hb_156850_030--Hb_000953_010 Hb_000059_210 Hb_000059_210 Hb_156850_030--Hb_000059_210 Hb_156850_030--Hb_004204_080 Hb_000077_070 Hb_000077_070 Hb_156850_030--Hb_000077_070 Hb_001728_100--Hb_000032_320 Hb_002027_260 Hb_002027_260 Hb_001728_100--Hb_002027_260 Hb_000107_500 Hb_000107_500 Hb_001728_100--Hb_000107_500 Hb_001728_100--Hb_004204_080 Hb_001728_100--Hb_000077_070 Hb_001797_050 Hb_001797_050 Hb_004204_080--Hb_001797_050 Hb_005730_030 Hb_005730_030 Hb_004204_080--Hb_005730_030 Hb_005532_050 Hb_005532_050 Hb_004204_080--Hb_005532_050 Hb_000031_050 Hb_000031_050 Hb_004204_080--Hb_000031_050 Hb_022408_010 Hb_022408_010 Hb_004204_080--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_004204_080--Hb_001541_020 Hb_008643_060--Hb_004204_080 Hb_002601_120 Hb_002601_120 Hb_008643_060--Hb_002601_120 Hb_001575_080 Hb_001575_080 Hb_008643_060--Hb_001575_080 Hb_002890_030 Hb_002890_030 Hb_008643_060--Hb_002890_030 Hb_008643_060--Hb_000861_070 Hb_012654_010 Hb_012654_010 Hb_001057_010--Hb_012654_010 Hb_000340_510 Hb_000340_510 Hb_001057_010--Hb_000340_510 Hb_005237_010 Hb_005237_010 Hb_001057_010--Hb_005237_010 Hb_017168_010 Hb_017168_010 Hb_001057_010--Hb_017168_010 Hb_003097_190 Hb_003097_190 Hb_001057_010--Hb_003097_190 Hb_002942_220 Hb_002942_220 Hb_001057_010--Hb_002942_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5581 9.3575 3.26457 5.62757 18.1847 13.3791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.22572 6.27191 12.3665 4.44767 1.07109

CAGE analysis