Hb_000270_790

Information

Type -
Description -
Location Contig270: 649491-653038
Sequence    

Annotation

kegg
ID rcu:RCOM_1511350
description spermidine synthase 1, putative (EC:2.1.1.53)
nr
ID KDP31122.1
description hypothetical protein JCGZ_11498 [Jatropha curcas]
swissprot
ID Q9ZTR0
description Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1
trembl
ID A0A067K4Q3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11498 PE=3 SV=1
Gene Ontology
ID GO:0016740
description spermidine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_790 0.0 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
2 Hb_000011_260 0.1229984083 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000628_060 0.1256993287 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
4 Hb_000188_140 0.1295888397 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
5 Hb_084304_010 0.1298091285 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
6 Hb_001418_050 0.1331834495 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
7 Hb_045786_010 0.1338135069 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_003777_150 0.1375250016 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
9 Hb_000152_630 0.1379557209 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
10 Hb_004453_060 0.1380800094 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
11 Hb_025194_070 0.1390456432 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
12 Hb_107658_010 0.1399711444 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
13 Hb_000206_270 0.142262026 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_000579_210 0.1428690788 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
15 Hb_020831_060 0.1445142426 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
16 Hb_023768_010 0.1485936223 - - -
17 Hb_002053_020 0.1506520701 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
18 Hb_011120_030 0.1511345715 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
19 Hb_150573_010 0.152145229 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
20 Hb_003427_070 0.1528570233 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]

Gene co-expression network

sample Hb_000270_790 Hb_000270_790 Hb_000011_260 Hb_000011_260 Hb_000270_790--Hb_000011_260 Hb_000628_060 Hb_000628_060 Hb_000270_790--Hb_000628_060 Hb_000188_140 Hb_000188_140 Hb_000270_790--Hb_000188_140 Hb_084304_010 Hb_084304_010 Hb_000270_790--Hb_084304_010 Hb_001418_050 Hb_001418_050 Hb_000270_790--Hb_001418_050 Hb_045786_010 Hb_045786_010 Hb_000270_790--Hb_045786_010 Hb_020831_060 Hb_020831_060 Hb_000011_260--Hb_020831_060 Hb_107658_010 Hb_107658_010 Hb_000011_260--Hb_107658_010 Hb_001369_190 Hb_001369_190 Hb_000011_260--Hb_001369_190 Hb_004970_100 Hb_004970_100 Hb_000011_260--Hb_004970_100 Hb_006088_020 Hb_006088_020 Hb_000011_260--Hb_006088_020 Hb_003777_150 Hb_003777_150 Hb_000628_060--Hb_003777_150 Hb_000579_210 Hb_000579_210 Hb_000628_060--Hb_000579_210 Hb_004474_020 Hb_004474_020 Hb_000628_060--Hb_004474_020 Hb_081228_010 Hb_081228_010 Hb_000628_060--Hb_081228_010 Hb_000628_060--Hb_084304_010 Hb_000628_060--Hb_004970_100 Hb_000152_630 Hb_000152_630 Hb_000188_140--Hb_000152_630 Hb_000230_220 Hb_000230_220 Hb_000188_140--Hb_000230_220 Hb_069384_010 Hb_069384_010 Hb_000188_140--Hb_069384_010 Hb_000186_090 Hb_000186_090 Hb_000188_140--Hb_000186_090 Hb_000087_160 Hb_000087_160 Hb_000188_140--Hb_000087_160 Hb_000188_140--Hb_084304_010 Hb_003427_070 Hb_003427_070 Hb_084304_010--Hb_003427_070 Hb_084304_010--Hb_003777_150 Hb_006351_050 Hb_006351_050 Hb_084304_010--Hb_006351_050 Hb_001500_020 Hb_001500_020 Hb_084304_010--Hb_001500_020 Hb_000739_190 Hb_000739_190 Hb_084304_010--Hb_000739_190 Hb_000098_230 Hb_000098_230 Hb_001418_050--Hb_000098_230 Hb_007441_100 Hb_007441_100 Hb_001418_050--Hb_007441_100 Hb_000847_110 Hb_000847_110 Hb_001418_050--Hb_000847_110 Hb_000378_030 Hb_000378_030 Hb_001418_050--Hb_000378_030 Hb_001541_170 Hb_001541_170 Hb_001418_050--Hb_001541_170 Hb_001418_050--Hb_001500_020 Hb_045786_010--Hb_000579_210 Hb_009851_040 Hb_009851_040 Hb_045786_010--Hb_009851_040 Hb_045786_010--Hb_000628_060 Hb_000628_100 Hb_000628_100 Hb_045786_010--Hb_000628_100 Hb_008196_010 Hb_008196_010 Hb_045786_010--Hb_008196_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0269047 0.142624 0.153983 0.865756 0.0260762 0.0134407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00962015 0.0504664

CAGE analysis