Hb_000270_820

Information

Type -
Description -
Location Contig270: 674305-674686
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_820 0.0 - - -
2 Hb_005834_030 0.0317554153 - - -
3 Hb_003675_010 0.0401802755 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
4 Hb_000510_380 0.0518375076 - - -
5 Hb_000482_130 0.0518423953 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_012543_020 0.0518467514 - - -
7 Hb_185616_010 0.0518537386 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_061463_010 0.0518910007 - - Cucumisin precursor, putative [Ricinus communis]
9 Hb_002130_010 0.0519038744 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
10 Hb_000098_160 0.0519682867 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003052_160 0.0519682867 - - -
12 Hb_000413_310 0.0519809909 - - -
13 Hb_007393_010 0.052078999 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
14 Hb_000914_160 0.0520979315 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
15 Hb_006053_010 0.0521102221 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_018006_020 0.0521274336 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
17 Hb_000111_160 0.052188794 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
18 Hb_004899_270 0.0522166392 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
19 Hb_123098_010 0.0522371803 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_028462_010 0.0522398855 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]

Gene co-expression network

sample Hb_000270_820 Hb_000270_820 Hb_005834_030 Hb_005834_030 Hb_000270_820--Hb_005834_030 Hb_003675_010 Hb_003675_010 Hb_000270_820--Hb_003675_010 Hb_000510_380 Hb_000510_380 Hb_000270_820--Hb_000510_380 Hb_000482_130 Hb_000482_130 Hb_000270_820--Hb_000482_130 Hb_012543_020 Hb_012543_020 Hb_000270_820--Hb_012543_020 Hb_185616_010 Hb_185616_010 Hb_000270_820--Hb_185616_010 Hb_005834_030--Hb_003675_010 Hb_001105_080 Hb_001105_080 Hb_005834_030--Hb_001105_080 Hb_005396_140 Hb_005396_140 Hb_005834_030--Hb_005396_140 Hb_140618_010 Hb_140618_010 Hb_005834_030--Hb_140618_010 Hb_001241_090 Hb_001241_090 Hb_005834_030--Hb_001241_090 Hb_003675_010--Hb_001105_080 Hb_003675_010--Hb_005396_140 Hb_003675_010--Hb_140618_010 Hb_003675_010--Hb_001241_090 Hb_000510_380--Hb_000482_130 Hb_000510_380--Hb_012543_020 Hb_000510_380--Hb_185616_010 Hb_061463_010 Hb_061463_010 Hb_000510_380--Hb_061463_010 Hb_002130_010 Hb_002130_010 Hb_000510_380--Hb_002130_010 Hb_000098_160 Hb_000098_160 Hb_000510_380--Hb_000098_160 Hb_000482_130--Hb_012543_020 Hb_000482_130--Hb_185616_010 Hb_000482_130--Hb_061463_010 Hb_000482_130--Hb_002130_010 Hb_000482_130--Hb_000098_160 Hb_012543_020--Hb_185616_010 Hb_012543_020--Hb_061463_010 Hb_012543_020--Hb_002130_010 Hb_012543_020--Hb_000098_160 Hb_185616_010--Hb_061463_010 Hb_185616_010--Hb_002130_010 Hb_185616_010--Hb_000098_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.36864 2.06381 0 0 0

CAGE analysis