Hb_000270_840

Information

Type -
Description -
Location Contig270: 686137-688039
Sequence    

Annotation

kegg
ID tcc:TCM_012039
description Deletion of SUV3 suppressor 1(I) isoform 1
nr
ID XP_009608220.1
description PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
swissprot
ID Q9XIR8
description Probable 26S proteasome complex subunit sem1-1 OS=Arabidopsis thaliana GN=At1g64750 PE=1 SV=1
trembl
ID A9PDM5
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0000502
description probable 26s proteasome complex subunit sem1-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28284: 680847-685576 , PASA_asmbl_28285: 686259-688030 , PASA_asmbl_28286: 686429-687071
cDNA
(Sanger)
(ID:Location)		 007_C17.ab1: 686259-687954 , 021_M18.ab1: 686259-687980 , 042_J18.ab1: 684320-685457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_840 0.0 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
2 Hb_000538_020 0.0725635306 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
3 Hb_000270_360 0.0844544954 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
4 Hb_000905_190 0.0848298804 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
5 Hb_000392_270 0.0856379696 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
6 Hb_002997_170 0.0866428512 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
7 Hb_001369_650 0.0870011655 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
8 Hb_002942_020 0.0873055154 - - nucleotide binding protein, putative [Ricinus communis]
9 Hb_000665_240 0.0919301903 - - Vesicle-associated membrane protein, putative [Ricinus communis]
10 Hb_005333_040 0.092786592 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
11 Hb_000473_040 0.0944701258 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
12 Hb_005928_060 0.0968990486 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
13 Hb_143766_090 0.0974761649 - - 60S ribosomal protein L31B [Hevea brasiliensis]
14 Hb_000977_130 0.0974859672 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
15 Hb_006501_150 0.0975221527 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000019_230 0.0983249215 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
17 Hb_000107_390 0.0990055641 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
18 Hb_079820_010 0.1010172927 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
19 Hb_004502_030 0.1011225697 - - unknown [Populus trichocarpa]
20 Hb_011360_140 0.1012147131 - - 40S ribosomal protein S19, putative [Ricinus communis]

Gene co-expression network

sample Hb_000270_840 Hb_000270_840 Hb_000538_020 Hb_000538_020 Hb_000270_840--Hb_000538_020 Hb_000270_360 Hb_000270_360 Hb_000270_840--Hb_000270_360 Hb_000905_190 Hb_000905_190 Hb_000270_840--Hb_000905_190 Hb_000392_270 Hb_000392_270 Hb_000270_840--Hb_000392_270 Hb_002997_170 Hb_002997_170 Hb_000270_840--Hb_002997_170 Hb_001369_650 Hb_001369_650 Hb_000270_840--Hb_001369_650 Hb_000107_390 Hb_000107_390 Hb_000538_020--Hb_000107_390 Hb_000666_110 Hb_000666_110 Hb_000538_020--Hb_000666_110 Hb_004722_060 Hb_004722_060 Hb_000538_020--Hb_004722_060 Hb_019962_030 Hb_019962_030 Hb_000538_020--Hb_019962_030 Hb_005527_050 Hb_005527_050 Hb_000538_020--Hb_005527_050 Hb_002942_020 Hb_002942_020 Hb_000270_360--Hb_002942_020 Hb_006501_150 Hb_006501_150 Hb_000270_360--Hb_006501_150 Hb_027892_060 Hb_027892_060 Hb_000270_360--Hb_027892_060 Hb_007441_340 Hb_007441_340 Hb_000270_360--Hb_007441_340 Hb_012675_090 Hb_012675_090 Hb_000270_360--Hb_012675_090 Hb_003642_060 Hb_003642_060 Hb_000905_190--Hb_003642_060 Hb_000905_190--Hb_002997_170 Hb_001214_130 Hb_001214_130 Hb_000905_190--Hb_001214_130 Hb_005928_060 Hb_005928_060 Hb_000905_190--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_001741_140 Hb_001741_140 Hb_000905_190--Hb_001741_140 Hb_000977_080 Hb_000977_080 Hb_000392_270--Hb_000977_080 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_002997_170--Hb_001741_140 Hb_000997_020 Hb_000997_020 Hb_002997_170--Hb_000997_020 Hb_168918_020 Hb_168918_020 Hb_002997_170--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_002997_170--Hb_012340_030 Hb_000045_130 Hb_000045_130 Hb_001369_650--Hb_000045_130 Hb_001369_650--Hb_011360_140 Hb_003001_060 Hb_003001_060 Hb_001369_650--Hb_003001_060 Hb_001369_650--Hb_000977_080 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
654.373 199.981 324.386 112.934 867.74 814.825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
725.121 821.247 428.013 112.498 80.5067

CAGE analysis