Hb_000270_850

Information

Type -
Description -
Location Contig270: 689295-689747
Sequence    

Annotation

kegg
ID rcu:RCOM_1511300
description hypothetical protein
nr
ID XP_002511421.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LBA0
description NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24 PE=1 SV=2
trembl
ID B9RB46
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1511300 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl56-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_850 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_156850_110 0.1583708571 - - PREDICTED: vinorine synthase-like [Jatropha curcas]
3 Hb_138628_010 0.1895126043 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_007441_060 0.1953716059 - - -
5 Hb_116635_010 0.2080995077 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_001218_080 0.2153115412 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_006615_040 0.2190430255 - - monoxygenase, putative [Ricinus communis]
8 Hb_051450_010 0.2331483645 - - conserved hypothetical protein [Ricinus communis]
9 Hb_057217_010 0.2339942092 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
10 Hb_114674_010 0.2348526368 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_019961_010 0.2354618339 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
12 Hb_042553_010 0.2388185246 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
13 Hb_012702_010 0.2390272999 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
14 Hb_007951_120 0.2391398512 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
15 Hb_004931_050 0.2423949888 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
16 Hb_181824_010 0.2449309227 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_007433_020 0.2450003485 - - hypothetical protein VITISV_005320 [Vitis vinifera]
18 Hb_016404_010 0.2508121112 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_002272_140 0.2515773534 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
20 Hb_025030_010 0.2523431611 - - -

Gene co-expression network

sample Hb_000270_850 Hb_000270_850 Hb_156850_110 Hb_156850_110 Hb_000270_850--Hb_156850_110 Hb_138628_010 Hb_138628_010 Hb_000270_850--Hb_138628_010 Hb_007441_060 Hb_007441_060 Hb_000270_850--Hb_007441_060 Hb_116635_010 Hb_116635_010 Hb_000270_850--Hb_116635_010 Hb_001218_080 Hb_001218_080 Hb_000270_850--Hb_001218_080 Hb_006615_040 Hb_006615_040 Hb_000270_850--Hb_006615_040 Hb_156850_110--Hb_001218_080 Hb_156850_110--Hb_138628_010 Hb_002205_260 Hb_002205_260 Hb_156850_110--Hb_002205_260 Hb_089140_020 Hb_089140_020 Hb_156850_110--Hb_089140_020 Hb_189242_010 Hb_189242_010 Hb_156850_110--Hb_189242_010 Hb_012702_010 Hb_012702_010 Hb_138628_010--Hb_012702_010 Hb_019961_010 Hb_019961_010 Hb_138628_010--Hb_019961_010 Hb_002272_140 Hb_002272_140 Hb_138628_010--Hb_002272_140 Hb_181824_010 Hb_181824_010 Hb_138628_010--Hb_181824_010 Hb_000003_420 Hb_000003_420 Hb_138628_010--Hb_000003_420 Hb_005568_060 Hb_005568_060 Hb_138628_010--Hb_005568_060 Hb_007773_030 Hb_007773_030 Hb_007441_060--Hb_007773_030 Hb_007885_080 Hb_007885_080 Hb_007441_060--Hb_007885_080 Hb_133636_010 Hb_133636_010 Hb_007441_060--Hb_133636_010 Hb_001377_500 Hb_001377_500 Hb_007441_060--Hb_001377_500 Hb_000676_030 Hb_000676_030 Hb_007441_060--Hb_000676_030 Hb_138575_010 Hb_138575_010 Hb_116635_010--Hb_138575_010 Hb_042553_010 Hb_042553_010 Hb_116635_010--Hb_042553_010 Hb_003893_020 Hb_003893_020 Hb_116635_010--Hb_003893_020 Hb_006911_060 Hb_006911_060 Hb_116635_010--Hb_006911_060 Hb_000940_020 Hb_000940_020 Hb_116635_010--Hb_000940_020 Hb_116635_010--Hb_012702_010 Hb_000684_170 Hb_000684_170 Hb_001218_080--Hb_000684_170 Hb_001501_050 Hb_001501_050 Hb_001218_080--Hb_001501_050 Hb_172632_020 Hb_172632_020 Hb_001218_080--Hb_172632_020 Hb_084611_010 Hb_084611_010 Hb_001218_080--Hb_084611_010 Hb_004230_060 Hb_004230_060 Hb_006615_040--Hb_004230_060 Hb_004976_040 Hb_004976_040 Hb_006615_040--Hb_004976_040 Hb_005147_040 Hb_005147_040 Hb_006615_040--Hb_005147_040 Hb_001584_010 Hb_001584_010 Hb_006615_040--Hb_001584_010 Hb_004466_070 Hb_004466_070 Hb_006615_040--Hb_004466_070 Hb_000107_440 Hb_000107_440 Hb_006615_040--Hb_000107_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0674062 1.30101 0.220301 0.0863004 0 0.148733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.209461 0

CAGE analysis