Hb_000270_870

Information

Type -
Description -
Location Contig270: 704603-709822
Sequence    

Annotation

kegg
ID rcu:RCOM_1511180
description protein kinase atmrk1, putative (EC:2.7.10.2)
nr
ID XP_012080088.1
description PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067KFT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11491 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28288: 704653-709685 , PASA_asmbl_28289: 707370-707727 , PASA_asmbl_28292: 708711-709024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_870 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
2 Hb_002804_020 0.1332427248 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
3 Hb_003872_010 0.1400584571 - - hypothetical protein PRUPE_ppa013215mg [Prunus persica]
4 Hb_001776_030 0.1429459332 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001488_340 0.1433412365 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
6 Hb_008511_060 0.1458439627 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
7 Hb_010053_040 0.1477989437 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
8 Hb_074449_010 0.1489746188 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
9 Hb_000494_080 0.1494725893 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
10 Hb_000413_070 0.1547167413 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000599_080 0.1557043112 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
12 Hb_024836_010 0.1565226792 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
13 Hb_001191_130 0.1577921034 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic [Jatropha curcas]
14 Hb_007765_070 0.1589931303 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
15 Hb_048476_150 0.1619886674 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
16 Hb_004374_080 0.1636303228 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
17 Hb_002471_180 0.1657539387 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_007919_080 0.166226889 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
19 Hb_000031_280 0.1671416588 - - -
20 Hb_002000_060 0.1677380628 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_870 Hb_000270_870 Hb_002804_020 Hb_002804_020 Hb_000270_870--Hb_002804_020 Hb_003872_010 Hb_003872_010 Hb_000270_870--Hb_003872_010 Hb_001776_030 Hb_001776_030 Hb_000270_870--Hb_001776_030 Hb_001488_340 Hb_001488_340 Hb_000270_870--Hb_001488_340 Hb_008511_060 Hb_008511_060 Hb_000270_870--Hb_008511_060 Hb_010053_040 Hb_010053_040 Hb_000270_870--Hb_010053_040 Hb_000733_050 Hb_000733_050 Hb_002804_020--Hb_000733_050 Hb_002541_020 Hb_002541_020 Hb_002804_020--Hb_002541_020 Hb_029866_100 Hb_029866_100 Hb_002804_020--Hb_029866_100 Hb_074449_010 Hb_074449_010 Hb_002804_020--Hb_074449_010 Hb_000413_070 Hb_000413_070 Hb_002804_020--Hb_000413_070 Hb_004374_080 Hb_004374_080 Hb_003872_010--Hb_004374_080 Hb_007803_060 Hb_007803_060 Hb_003872_010--Hb_007803_060 Hb_002000_060 Hb_002000_060 Hb_003872_010--Hb_002000_060 Hb_000661_110 Hb_000661_110 Hb_003872_010--Hb_000661_110 Hb_147505_010 Hb_147505_010 Hb_003872_010--Hb_147505_010 Hb_004619_070 Hb_004619_070 Hb_001776_030--Hb_004619_070 Hb_001776_030--Hb_000413_070 Hb_002471_110 Hb_002471_110 Hb_001776_030--Hb_002471_110 Hb_001776_030--Hb_002804_020 Hb_001776_030--Hb_003872_010 Hb_005085_020 Hb_005085_020 Hb_001488_340--Hb_005085_020 Hb_001488_340--Hb_074449_010 Hb_001882_040 Hb_001882_040 Hb_001488_340--Hb_001882_040 Hb_001141_410 Hb_001141_410 Hb_001488_340--Hb_001141_410 Hb_000198_070 Hb_000198_070 Hb_001488_340--Hb_000198_070 Hb_006831_070 Hb_006831_070 Hb_008511_060--Hb_006831_070 Hb_002217_380 Hb_002217_380 Hb_008511_060--Hb_002217_380 Hb_009393_200 Hb_009393_200 Hb_008511_060--Hb_009393_200 Hb_086022_010 Hb_086022_010 Hb_008511_060--Hb_086022_010 Hb_008511_060--Hb_010053_040 Hb_000608_350 Hb_000608_350 Hb_008511_060--Hb_000608_350 Hb_002965_040 Hb_002965_040 Hb_010053_040--Hb_002965_040 Hb_000735_050 Hb_000735_050 Hb_010053_040--Hb_000735_050 Hb_005000_320 Hb_005000_320 Hb_010053_040--Hb_005000_320 Hb_000637_140 Hb_000637_140 Hb_010053_040--Hb_000637_140 Hb_003038_120 Hb_003038_120 Hb_010053_040--Hb_003038_120 Hb_003891_070 Hb_003891_070 Hb_010053_040--Hb_003891_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.9885 13.2052 28.5301 32.5316 11.3672 23.7449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.55823 4.96006 6.92564 5.78506 15.8904

CAGE analysis