Hb_000272_020

Information

Type -
Description -
Location Contig272: 41950-45309
Sequence    

Annotation

kegg
ID rcu:RCOM_0701480
description oxidoreductase, putative
nr
ID XP_002523530.1
description oxidoreductase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SC11
description Oxidoreductase, putative OS=Ricinus communis GN=RCOM_0701480 PE=4 SV=1
Gene Ontology
ID GO:0005634
description fad-dependent oxidoreductase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28461: 41879-45353
cDNA
(Sanger)
(ID:Location)		 006_N08.ab1: 41879-43162

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_020 0.0 - - oxidoreductase, putative [Ricinus communis]
2 Hb_002253_100 0.0760991482 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
3 Hb_001579_270 0.0805758954 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
4 Hb_000329_140 0.0851416271 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
5 Hb_000103_080 0.0859372687 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
6 Hb_000003_080 0.089870017 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
7 Hb_020581_010 0.0902110437 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_029921_040 0.0963555602 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003398_130 0.0965414295 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
10 Hb_008406_190 0.0972717191 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
11 Hb_001842_100 0.0972871901 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
12 Hb_008055_040 0.0982972951 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
13 Hb_002739_050 0.1000327345 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
14 Hb_000086_380 0.101771748 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
15 Hb_007163_070 0.1036868966 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
16 Hb_002112_020 0.1037351942 - - 60S ribosomal protein L9, putative [Ricinus communis]
17 Hb_000093_160 0.1048437288 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
18 Hb_038172_010 0.1052251332 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
19 Hb_028227_020 0.1057223138 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
20 Hb_003878_070 0.1062173498 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000272_020 Hb_000272_020 Hb_002253_100 Hb_002253_100 Hb_000272_020--Hb_002253_100 Hb_001579_270 Hb_001579_270 Hb_000272_020--Hb_001579_270 Hb_000329_140 Hb_000329_140 Hb_000272_020--Hb_000329_140 Hb_000103_080 Hb_000103_080 Hb_000272_020--Hb_000103_080 Hb_000003_080 Hb_000003_080 Hb_000272_020--Hb_000003_080 Hb_020581_010 Hb_020581_010 Hb_000272_020--Hb_020581_010 Hb_002739_050 Hb_002739_050 Hb_002253_100--Hb_002739_050 Hb_014109_040 Hb_014109_040 Hb_002253_100--Hb_014109_040 Hb_007576_080 Hb_007576_080 Hb_002253_100--Hb_007576_080 Hb_005697_060 Hb_005697_060 Hb_002253_100--Hb_005697_060 Hb_003780_030 Hb_003780_030 Hb_002253_100--Hb_003780_030 Hb_007672_060 Hb_007672_060 Hb_001579_270--Hb_007672_060 Hb_000599_300 Hb_000599_300 Hb_001579_270--Hb_000599_300 Hb_000054_090 Hb_000054_090 Hb_001579_270--Hb_000054_090 Hb_054865_120 Hb_054865_120 Hb_001579_270--Hb_054865_120 Hb_033594_120 Hb_033594_120 Hb_001579_270--Hb_033594_120 Hb_003633_030 Hb_003633_030 Hb_001579_270--Hb_003633_030 Hb_002728_070 Hb_002728_070 Hb_000329_140--Hb_002728_070 Hb_005306_170 Hb_005306_170 Hb_000329_140--Hb_005306_170 Hb_000365_120 Hb_000365_120 Hb_000329_140--Hb_000365_120 Hb_004097_050 Hb_004097_050 Hb_000329_140--Hb_004097_050 Hb_007632_030 Hb_007632_030 Hb_000329_140--Hb_007632_030 Hb_008406_190 Hb_008406_190 Hb_000103_080--Hb_008406_190 Hb_003333_060 Hb_003333_060 Hb_000103_080--Hb_003333_060 Hb_000103_080--Hb_033594_120 Hb_010423_040 Hb_010423_040 Hb_000103_080--Hb_010423_040 Hb_000960_060 Hb_000960_060 Hb_000103_080--Hb_000960_060 Hb_000116_440 Hb_000116_440 Hb_000003_080--Hb_000116_440 Hb_000342_100 Hb_000342_100 Hb_000003_080--Hb_000342_100 Hb_000003_080--Hb_020581_010 Hb_000220_220 Hb_000220_220 Hb_000003_080--Hb_000220_220 Hb_001842_100 Hb_001842_100 Hb_000003_080--Hb_001842_100 Hb_020581_010--Hb_000342_100 Hb_020581_010--Hb_002253_100 Hb_002893_050 Hb_002893_050 Hb_020581_010--Hb_002893_050 Hb_020581_010--Hb_001842_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.88609 1.33996 1.63616 1.74015 2.58864 3.46575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49728 4.29818 0.873228 2.32791 2.11498

CAGE analysis