Hb_000272_040

Information

Type -
Description -
Location Contig272: 58172-59777
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_040 0.0 - - -
2 Hb_000116_070 0.2775678582 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22381 [Jatropha curcas]
3 Hb_002253_090 0.2812252318 - - Chitinase 1 precursor, putative [Ricinus communis]
4 Hb_011139_050 0.2869402141 - - nicotinate phosphoribosyltransferase family protein [Populus trichocarpa]
5 Hb_122273_010 0.2881811018 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_004125_120 0.2999391002 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_016567_010 0.3142255092 - - -
8 Hb_003598_040 0.3213830538 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
9 Hb_000228_060 0.3258275244 - - hypothetical protein JCGZ_21532 [Jatropha curcas]
10 Hb_015941_040 0.3268644879 - - L-galactono-1,4-lactone dehydrogenase, mitochondrial [Cucumis sativus]
11 Hb_000608_430 0.332199163 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
12 Hb_000094_340 0.3322286447 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
13 Hb_004619_070 0.3325487685 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
14 Hb_007477_030 0.3352754771 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
15 Hb_000084_200 0.3400518268 - - PREDICTED: uncharacterized protein LOC105634688 isoform X2 [Jatropha curcas]
16 Hb_186725_010 0.3410965215 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_001722_050 0.3419950965 - - calcium binding family protein [Populus trichocarpa]
18 Hb_000203_230 0.3427589428 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
19 Hb_001357_330 0.3434556322 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
20 Hb_067730_010 0.3441573104 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_000272_040 Hb_000272_040 Hb_000116_070 Hb_000116_070 Hb_000272_040--Hb_000116_070 Hb_002253_090 Hb_002253_090 Hb_000272_040--Hb_002253_090 Hb_011139_050 Hb_011139_050 Hb_000272_040--Hb_011139_050 Hb_122273_010 Hb_122273_010 Hb_000272_040--Hb_122273_010 Hb_004125_120 Hb_004125_120 Hb_000272_040--Hb_004125_120 Hb_016567_010 Hb_016567_010 Hb_000272_040--Hb_016567_010 Hb_000116_070--Hb_002253_090 Hb_002540_050 Hb_002540_050 Hb_000116_070--Hb_002540_050 Hb_000608_430 Hb_000608_430 Hb_000116_070--Hb_000608_430 Hb_001411_040 Hb_001411_040 Hb_000116_070--Hb_001411_040 Hb_004088_050 Hb_004088_050 Hb_000116_070--Hb_004088_050 Hb_000347_050 Hb_000347_050 Hb_002253_090--Hb_000347_050 Hb_141881_010 Hb_141881_010 Hb_002253_090--Hb_141881_010 Hb_000107_180 Hb_000107_180 Hb_002253_090--Hb_000107_180 Hb_002253_090--Hb_001411_040 Hb_011872_010 Hb_011872_010 Hb_011139_050--Hb_011872_010 Hb_148800_010 Hb_148800_010 Hb_011139_050--Hb_148800_010 Hb_000656_050 Hb_000656_050 Hb_011139_050--Hb_000656_050 Hb_007317_090 Hb_007317_090 Hb_011139_050--Hb_007317_090 Hb_004466_050 Hb_004466_050 Hb_011139_050--Hb_004466_050 Hb_000094_340 Hb_000094_340 Hb_122273_010--Hb_000094_340 Hb_002701_110 Hb_002701_110 Hb_122273_010--Hb_002701_110 Hb_112046_010 Hb_112046_010 Hb_122273_010--Hb_112046_010 Hb_001196_040 Hb_001196_040 Hb_122273_010--Hb_001196_040 Hb_122273_010--Hb_016567_010 Hb_001277_230 Hb_001277_230 Hb_122273_010--Hb_001277_230 Hb_004125_120--Hb_000608_430 Hb_019837_020 Hb_019837_020 Hb_004125_120--Hb_019837_020 Hb_000330_030 Hb_000330_030 Hb_004125_120--Hb_000330_030 Hb_002759_100 Hb_002759_100 Hb_004125_120--Hb_002759_100 Hb_000205_230 Hb_000205_230 Hb_004125_120--Hb_000205_230 Hb_000856_130 Hb_000856_130 Hb_004125_120--Hb_000856_130 Hb_003497_040 Hb_003497_040 Hb_016567_010--Hb_003497_040 Hb_001056_030 Hb_001056_030 Hb_016567_010--Hb_001056_030 Hb_001401_080 Hb_001401_080 Hb_016567_010--Hb_001401_080 Hb_000008_360 Hb_000008_360 Hb_016567_010--Hb_000008_360 Hb_000105_050 Hb_000105_050 Hb_016567_010--Hb_000105_050 Hb_029866_120 Hb_029866_120 Hb_016567_010--Hb_029866_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0813698 0.0257251 0.036609 0.0366627 0 0.0453412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0556718 0 0.0111286 0.0579539

CAGE analysis