Hb_000272_070

Information

Type -
Description -
Location Contig272: 82240-92439
Sequence    

Annotation

kegg
ID tcc:TCM_037091
description SNARE-like superfamily protein
nr
ID AKL79342.1
description snare protein YKt [Hevea brasiliensis]
swissprot
ID Q9ZRD6
description VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1
trembl
ID Q6J1J4
description Putative SNARE protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016021
description vamp-like protein ykt61

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28466: 84290-84477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_070 0.0 - - snare protein YKt [Hevea brasiliensis]
2 Hb_006573_220 0.0778936224 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
3 Hb_001687_040 0.0822335251 - - actin-depolymerizing factor [Hevea brasiliensis]
4 Hb_000398_160 0.0835424844 - - GDP-mannose transporter, putative [Ricinus communis]
5 Hb_000069_100 0.0844949303 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003561_030 0.0874040376 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
7 Hb_003938_180 0.0915222351 - - lesion inducing family protein [Populus trichocarpa]
8 Hb_001191_090 0.0922411387 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
9 Hb_003053_030 0.0931978476 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
10 Hb_004449_200 0.095219522 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
11 Hb_002631_020 0.0955526494 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
12 Hb_006831_030 0.0956360397 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
13 Hb_000224_090 0.0966715512 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
14 Hb_000722_040 0.0970225001 - - -
15 Hb_000069_550 0.0980929589 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
16 Hb_002603_150 0.0981351089 - - PREDICTED: protein yippee-like [Jatropha curcas]
17 Hb_006452_040 0.0988321578 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
18 Hb_000329_330 0.0997382634 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
19 Hb_017862_010 0.10030494 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
20 Hb_004041_040 0.100927255 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]

Gene co-expression network

sample Hb_000272_070 Hb_000272_070 Hb_006573_220 Hb_006573_220 Hb_000272_070--Hb_006573_220 Hb_001687_040 Hb_001687_040 Hb_000272_070--Hb_001687_040 Hb_000398_160 Hb_000398_160 Hb_000272_070--Hb_000398_160 Hb_000069_100 Hb_000069_100 Hb_000272_070--Hb_000069_100 Hb_003561_030 Hb_003561_030 Hb_000272_070--Hb_003561_030 Hb_003938_180 Hb_003938_180 Hb_000272_070--Hb_003938_180 Hb_001191_090 Hb_001191_090 Hb_006573_220--Hb_001191_090 Hb_000329_330 Hb_000329_330 Hb_006573_220--Hb_000329_330 Hb_006573_220--Hb_001687_040 Hb_002097_060 Hb_002097_060 Hb_006573_220--Hb_002097_060 Hb_003376_030 Hb_003376_030 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150 Hb_001687_040--Hb_002097_060 Hb_001687_040--Hb_001191_090 Hb_001687_040--Hb_000069_100 Hb_003053_030 Hb_003053_030 Hb_001687_040--Hb_003053_030 Hb_006831_030 Hb_006831_030 Hb_000398_160--Hb_006831_030 Hb_004041_040 Hb_004041_040 Hb_000398_160--Hb_004041_040 Hb_000398_160--Hb_000069_100 Hb_001006_180 Hb_001006_180 Hb_000398_160--Hb_001006_180 Hb_003929_120 Hb_003929_120 Hb_000398_160--Hb_003929_120 Hb_000069_100--Hb_002097_060 Hb_000069_100--Hb_006831_030 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_000069_100--Hb_006573_220 Hb_000722_040 Hb_000722_040 Hb_003561_030--Hb_000722_040 Hb_011161_050 Hb_011161_050 Hb_003561_030--Hb_011161_050 Hb_187083_010 Hb_187083_010 Hb_003561_030--Hb_187083_010 Hb_000975_110 Hb_000975_110 Hb_003561_030--Hb_000975_110 Hb_000367_210 Hb_000367_210 Hb_003561_030--Hb_000367_210 Hb_001862_100 Hb_001862_100 Hb_003938_180--Hb_001862_100 Hb_003938_180--Hb_000069_100 Hb_002471_080 Hb_002471_080 Hb_003938_180--Hb_002471_080 Hb_005731_170 Hb_005731_170 Hb_003938_180--Hb_005731_170 Hb_003938_180--Hb_007382_150 Hb_148200_010 Hb_148200_010 Hb_003938_180--Hb_148200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.1091 12.2594 23.5598 91.5882 73.7272 83.0878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
220.295 289.541 207.993 48.715 29.5594

CAGE analysis