Hb_000272_100

Information

Type -
Description -
Location Contig272: 135067-138556
Sequence    

Annotation

kegg
ID pxb:103949110
description uncharacterized LOC103949110
nr
ID XP_009358483.1
description PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID M5VR86
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012368mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28471: 135166-138549
cDNA
(Sanger)
(ID:Location)		 034_P24.ab1: 135237-138463 , 044_D23.ab1: 135178-138261

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_100 0.0 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
2 Hb_033491_010 0.063222205 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
3 Hb_159558_030 0.0689723347 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
4 Hb_000732_260 0.0735005589 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
5 Hb_003086_110 0.0744624357 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
6 Hb_003086_020 0.07592552 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
7 Hb_004607_140 0.0783351575 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
8 Hb_004221_010 0.0806572308 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
9 Hb_001811_150 0.0821952 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
10 Hb_118977_020 0.0828859731 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
11 Hb_002400_220 0.0831348975 - - Vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_000997_060 0.0848492205 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
13 Hb_002762_060 0.0850659877 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
14 Hb_003728_020 0.0862082093 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000282_060 0.0868998945 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
16 Hb_000169_010 0.0869894911 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
17 Hb_157854_010 0.0873495685 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
18 Hb_158092_070 0.0878980814 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
19 Hb_006569_020 0.0879544664 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
20 Hb_001221_410 0.0886423217 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000272_100 Hb_000272_100 Hb_033491_010 Hb_033491_010 Hb_000272_100--Hb_033491_010 Hb_159558_030 Hb_159558_030 Hb_000272_100--Hb_159558_030 Hb_000732_260 Hb_000732_260 Hb_000272_100--Hb_000732_260 Hb_003086_110 Hb_003086_110 Hb_000272_100--Hb_003086_110 Hb_003086_020 Hb_003086_020 Hb_000272_100--Hb_003086_020 Hb_004607_140 Hb_004607_140 Hb_000272_100--Hb_004607_140 Hb_001369_060 Hb_001369_060 Hb_033491_010--Hb_001369_060 Hb_033491_010--Hb_000732_260 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_000784_090 Hb_000784_090 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050 Hb_000500_130 Hb_000500_130 Hb_159558_030--Hb_000500_130 Hb_002400_220 Hb_002400_220 Hb_159558_030--Hb_002400_220 Hb_006569_020 Hb_006569_020 Hb_159558_030--Hb_006569_020 Hb_158092_070 Hb_158092_070 Hb_159558_030--Hb_158092_070 Hb_002553_020 Hb_002553_020 Hb_159558_030--Hb_002553_020 Hb_000732_260--Hb_000282_060 Hb_002249_140 Hb_002249_140 Hb_000732_260--Hb_002249_140 Hb_001269_150 Hb_001269_150 Hb_000732_260--Hb_001269_150 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150 Hb_007166_050 Hb_007166_050 Hb_003086_110--Hb_007166_050 Hb_003086_110--Hb_003086_020 Hb_118977_020 Hb_118977_020 Hb_003086_110--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_003086_110--Hb_001437_040 Hb_000617_320 Hb_000617_320 Hb_003086_110--Hb_000617_320 Hb_000152_140 Hb_000152_140 Hb_003086_020--Hb_000152_140 Hb_133271_020 Hb_133271_020 Hb_003086_020--Hb_133271_020 Hb_004662_030 Hb_004662_030 Hb_003086_020--Hb_004662_030 Hb_157854_010 Hb_157854_010 Hb_003086_020--Hb_157854_010 Hb_004607_140--Hb_157854_010 Hb_004204_030 Hb_004204_030 Hb_004607_140--Hb_004204_030 Hb_000163_200 Hb_000163_200 Hb_004607_140--Hb_000163_200 Hb_006824_020 Hb_006824_020 Hb_004607_140--Hb_006824_020 Hb_004607_140--Hb_000732_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
252.765 76.3922 28.4088 64.2002 237.843 243.512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
348.831 192.503 144.468 85.2914 29.9314

CAGE analysis