Hb_000272_110

Information

Type -
Description -
Location Contig272: 139023-143714
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11950g
description POPTRDRAFT_779599; calmodulin-binding protein 60-D
nr
ID XP_012071464.1
description PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
swissprot
ID F4IPM3
description Calmodulin-binding protein 60 E OS=Arabidopsis thaliana GN=CBP60E PE=2 SV=1
trembl
ID A0A067KR81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28471: 135166-138549 , PASA_asmbl_28472: 139151-143702
cDNA
(Sanger)
(ID:Location)		 006_J17.ab1: 139291-141263 , 030_J07.ab1: 139291-141194 , 034_P24.ab1: 135237-138463 , 044_D23.ab1: 135178-138261

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_110 0.0 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
2 Hb_001085_300 0.1102059283 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
3 Hb_007007_080 0.1142096404 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001318_150 0.1143071582 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
5 Hb_001246_160 0.1175482232 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
6 Hb_001898_130 0.125476298 - - ATP binding protein, putative [Ricinus communis]
7 Hb_002876_070 0.1259989552 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
8 Hb_000069_330 0.1312057218 - - protein with unknown function [Ricinus communis]
9 Hb_005496_160 0.1350625313 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
10 Hb_000009_200 0.1385267084 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
11 Hb_018790_050 0.1395021444 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
12 Hb_056196_060 0.1416274618 - - hexokinase [Manihot esculenta]
13 Hb_048476_040 0.1420515489 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
14 Hb_002122_030 0.1447909716 - - -
15 Hb_003207_100 0.1482416512 transcription factor TF Family: TCP PREDICTED: transcription factor TCP9-like [Jatropha curcas]
16 Hb_000045_260 0.1487046588 - - protein with unknown function [Ricinus communis]
17 Hb_008020_020 0.1511629423 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
18 Hb_161901_020 0.1520259763 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
19 Hb_004117_170 0.1546210974 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
20 Hb_000421_230 0.155607987 - - retinal degeneration B beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_000272_110 Hb_000272_110 Hb_001085_300 Hb_001085_300 Hb_000272_110--Hb_001085_300 Hb_007007_080 Hb_007007_080 Hb_000272_110--Hb_007007_080 Hb_001318_150 Hb_001318_150 Hb_000272_110--Hb_001318_150 Hb_001246_160 Hb_001246_160 Hb_000272_110--Hb_001246_160 Hb_001898_130 Hb_001898_130 Hb_000272_110--Hb_001898_130 Hb_002876_070 Hb_002876_070 Hb_000272_110--Hb_002876_070 Hb_056196_060 Hb_056196_060 Hb_001085_300--Hb_056196_060 Hb_008112_010 Hb_008112_010 Hb_001085_300--Hb_008112_010 Hb_001085_300--Hb_001318_150 Hb_003018_030 Hb_003018_030 Hb_001085_300--Hb_003018_030 Hb_004837_220 Hb_004837_220 Hb_001085_300--Hb_004837_220 Hb_000069_330 Hb_000069_330 Hb_007007_080--Hb_000069_330 Hb_003224_030 Hb_003224_030 Hb_007007_080--Hb_003224_030 Hb_003752_120 Hb_003752_120 Hb_007007_080--Hb_003752_120 Hb_002477_120 Hb_002477_120 Hb_007007_080--Hb_002477_120 Hb_005496_160 Hb_005496_160 Hb_007007_080--Hb_005496_160 Hb_002154_020 Hb_002154_020 Hb_007007_080--Hb_002154_020 Hb_002249_170 Hb_002249_170 Hb_001318_150--Hb_002249_170 Hb_086639_050 Hb_086639_050 Hb_001318_150--Hb_086639_050 Hb_048476_040 Hb_048476_040 Hb_001318_150--Hb_048476_040 Hb_000111_390 Hb_000111_390 Hb_001318_150--Hb_000111_390 Hb_000749_070 Hb_000749_070 Hb_001246_160--Hb_000749_070 Hb_000009_200 Hb_000009_200 Hb_001246_160--Hb_000009_200 Hb_005394_010 Hb_005394_010 Hb_001246_160--Hb_005394_010 Hb_002122_030 Hb_002122_030 Hb_001246_160--Hb_002122_030 Hb_018790_050 Hb_018790_050 Hb_001246_160--Hb_018790_050 Hb_001246_160--Hb_056196_060 Hb_001898_130--Hb_018790_050 Hb_001898_130--Hb_000069_330 Hb_003581_280 Hb_003581_280 Hb_001898_130--Hb_003581_280 Hb_001898_130--Hb_000009_200 Hb_001474_050 Hb_001474_050 Hb_001898_130--Hb_001474_050 Hb_001898_130--Hb_048476_040 Hb_004586_130 Hb_004586_130 Hb_002876_070--Hb_004586_130 Hb_003207_100 Hb_003207_100 Hb_002876_070--Hb_003207_100 Hb_011930_120 Hb_011930_120 Hb_002876_070--Hb_011930_120 Hb_008020_020 Hb_008020_020 Hb_002876_070--Hb_008020_020 Hb_002876_070--Hb_001246_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.66256 70.3432 56.4755 25.2482 2.79905 4.70131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.75289 5.64668 11.8124 18.2921 10.2139

CAGE analysis