Hb_000274_030

Information

Type -
Description -
Location Contig274: 39166-47089
Sequence    

Annotation

kegg
ID sly:104647507
description uncharacterized LOC104647507
nr
ID XP_010321238.1
description PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104221396

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000274_030 0.0 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
2 Hb_003266_120 0.0330320307 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
3 Hb_043295_010 0.1687145283 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
4 Hb_007245_010 0.1688142688 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
5 Hb_000964_160 0.1722020191 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
6 Hb_001248_040 0.2059402767 - - -
7 Hb_002545_030 0.2129534207 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000441_010 0.2177892834 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_014720_060 0.2184998584 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
10 Hb_021409_130 0.231728845 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
11 Hb_131101_010 0.2334920395 - - -
12 Hb_001761_110 0.2377729024 - - Contains similarity to Cf-2.2 gene gb
13 Hb_001007_080 0.2744260355 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
14 Hb_010174_050 0.2979240655 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
15 Hb_174245_020 0.2983316502 - - -
16 Hb_001959_230 0.3182017574 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
17 Hb_000270_860 0.3215135489 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000011_030 0.3252663637 - - hypothetical protein POPTR_0003s18920g [Populus trichocarpa]
19 Hb_000015_110 0.3252663637 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
20 Hb_000029_040 0.3252663637 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000274_030 Hb_000274_030 Hb_003266_120 Hb_003266_120 Hb_000274_030--Hb_003266_120 Hb_043295_010 Hb_043295_010 Hb_000274_030--Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_000274_030--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_000274_030--Hb_000964_160 Hb_001248_040 Hb_001248_040 Hb_000274_030--Hb_001248_040 Hb_002545_030 Hb_002545_030 Hb_000274_030--Hb_002545_030 Hb_003266_120--Hb_043295_010 Hb_003266_120--Hb_007245_010 Hb_003266_120--Hb_000964_160 Hb_003266_120--Hb_001248_040 Hb_021409_130 Hb_021409_130 Hb_003266_120--Hb_021409_130 Hb_043295_010--Hb_007245_010 Hb_043295_010--Hb_000964_160 Hb_043295_010--Hb_002545_030 Hb_000441_010 Hb_000441_010 Hb_043295_010--Hb_000441_010 Hb_014720_060 Hb_014720_060 Hb_043295_010--Hb_014720_060 Hb_131101_010 Hb_131101_010 Hb_043295_010--Hb_131101_010 Hb_007245_010--Hb_000964_160 Hb_007245_010--Hb_002545_030 Hb_007245_010--Hb_000441_010 Hb_007245_010--Hb_014720_060 Hb_007245_010--Hb_131101_010 Hb_000964_160--Hb_002545_030 Hb_000964_160--Hb_000441_010 Hb_000964_160--Hb_014720_060 Hb_000964_160--Hb_131101_010 Hb_001248_040--Hb_021409_130 Hb_001248_040--Hb_043295_010 Hb_001248_040--Hb_007245_010 Hb_001248_040--Hb_000964_160 Hb_002545_030--Hb_000441_010 Hb_002545_030--Hb_014720_060 Hb_002545_030--Hb_131101_010 Hb_001761_110 Hb_001761_110 Hb_002545_030--Hb_001761_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0790463 0 0.0192915 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis