Hb_000274_050

Information

Type -
Description -
Location Contig274: 78611-83504
Sequence    

Annotation

kegg
ID rcu:RCOM_1585750
description Squalene monooxygenase, putative (EC:1.14.99.7)
nr
ID XP_002510043.1
description Squalene monooxygenase, putative [Ricinus communis]
swissprot
ID O48651
description Squalene monooxygenase OS=Panax ginseng PE=2 SV=1
trembl
ID B9R6V0
description Squalene monooxygenase, putative OS=Ricinus communis GN=RCOM_1585750 PE=4 SV=1
Gene Ontology
ID GO:0016021
description squalene monooxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28657: 78529-83499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000274_050 0.0 - - Squalene monooxygenase, putative [Ricinus communis]
2 Hb_000963_050 0.1015329452 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
3 Hb_001188_050 0.1258821212 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005000_010 0.1282494517 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
5 Hb_002876_200 0.1303151848 - - PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
6 Hb_001040_080 0.1428791742 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
7 Hb_001439_210 0.1436310272 - - EXS family protein [Populus trichocarpa]
8 Hb_050847_040 0.1442130811 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
9 Hb_004586_040 0.1446337325 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
10 Hb_002897_010 0.146681517 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
11 Hb_000320_310 0.1468808216 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
12 Hb_004218_200 0.1476073102 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_000544_200 0.1477779607 - - PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]
14 Hb_003929_190 0.1496980699 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
15 Hb_004330_020 0.1498717296 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
16 Hb_001488_290 0.1504109584 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
17 Hb_003029_120 0.1511253311 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
18 Hb_186247_010 0.1518463312 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
19 Hb_008511_040 0.1542355466 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_000200_330 0.1592950374 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]

Gene co-expression network

sample Hb_000274_050 Hb_000274_050 Hb_000963_050 Hb_000963_050 Hb_000274_050--Hb_000963_050 Hb_001188_050 Hb_001188_050 Hb_000274_050--Hb_001188_050 Hb_005000_010 Hb_005000_010 Hb_000274_050--Hb_005000_010 Hb_002876_200 Hb_002876_200 Hb_000274_050--Hb_002876_200 Hb_001040_080 Hb_001040_080 Hb_000274_050--Hb_001040_080 Hb_001439_210 Hb_001439_210 Hb_000274_050--Hb_001439_210 Hb_012286_060 Hb_012286_060 Hb_000963_050--Hb_012286_060 Hb_000963_050--Hb_001188_050 Hb_020805_040 Hb_020805_040 Hb_000963_050--Hb_020805_040 Hb_143629_120 Hb_143629_120 Hb_000963_050--Hb_143629_120 Hb_118283_010 Hb_118283_010 Hb_000963_050--Hb_118283_010 Hb_186247_010 Hb_186247_010 Hb_001188_050--Hb_186247_010 Hb_003606_050 Hb_003606_050 Hb_001188_050--Hb_003606_050 Hb_003540_120 Hb_003540_120 Hb_001188_050--Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_001188_050--Hb_030685_010 Hb_000320_310 Hb_000320_310 Hb_005000_010--Hb_000320_310 Hb_004330_020 Hb_004330_020 Hb_005000_010--Hb_004330_020 Hb_004218_200 Hb_004218_200 Hb_005000_010--Hb_004218_200 Hb_010863_030 Hb_010863_030 Hb_005000_010--Hb_010863_030 Hb_005000_010--Hb_002876_200 Hb_001488_290 Hb_001488_290 Hb_002876_200--Hb_001488_290 Hb_004586_040 Hb_004586_040 Hb_002876_200--Hb_004586_040 Hb_050847_040 Hb_050847_040 Hb_002876_200--Hb_050847_040 Hb_000086_180 Hb_000086_180 Hb_002876_200--Hb_000086_180 Hb_003687_040 Hb_003687_040 Hb_001040_080--Hb_003687_040 Hb_000834_220 Hb_000834_220 Hb_001040_080--Hb_000834_220 Hb_001019_160 Hb_001019_160 Hb_001040_080--Hb_001019_160 Hb_000061_310 Hb_000061_310 Hb_001040_080--Hb_000061_310 Hb_005730_110 Hb_005730_110 Hb_001040_080--Hb_005730_110 Hb_000316_060 Hb_000316_060 Hb_001040_080--Hb_000316_060 Hb_001439_210--Hb_050847_040 Hb_000968_060 Hb_000968_060 Hb_001439_210--Hb_000968_060 Hb_000649_330 Hb_000649_330 Hb_001439_210--Hb_000649_330 Hb_003849_120 Hb_003849_120 Hb_001439_210--Hb_003849_120 Hb_001221_390 Hb_001221_390 Hb_001439_210--Hb_001221_390 Hb_004545_080 Hb_004545_080 Hb_001439_210--Hb_004545_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.7597 5.51565 23.38 26.2526 3.60109 2.01312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.190033 0.149521 0.283177 5.22969 11.2415

CAGE analysis