Hb_000275_040

Information

Type -
Description -
Location Contig275: 37947-42590
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000275_040 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_030619_010 0.2350672356 - - -
3 Hb_000529_240 0.246994759 - - -
4 Hb_000670_030 0.2620504024 - - -
5 Hb_069022_010 0.2698703518 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000567_040 0.2769635673 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
7 Hb_003209_030 0.2771789839 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
8 Hb_010680_010 0.2816462885 - - -
9 Hb_009139_010 0.284443987 - - putative Phospholipid-Diacylglycerol acyltransferase [Elaeis guineensis]
10 Hb_005946_160 0.2905448766 transcription factor TF Family: MBF1 ethylene-responsive transcriptional coactivator [Hevea brasiliensis]
11 Hb_000987_090 0.2931135752 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
12 Hb_000453_210 0.2942677174 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
13 Hb_008667_050 0.2947331307 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
14 Hb_001495_060 0.2952614296 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
15 Hb_027428_030 0.2959050048 - - unnamed protein product [Coffea canephora]
16 Hb_142392_010 0.2967187486 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
17 Hb_000445_190 0.2981147245 - - -
18 Hb_000331_310 0.3103728007 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
19 Hb_001864_030 0.3162834436 - - thioredoxin h [Hevea brasiliensis]
20 Hb_116195_010 0.3209648342 - - -

Gene co-expression network

sample Hb_000275_040 Hb_000275_040 Hb_030619_010 Hb_030619_010 Hb_000275_040--Hb_030619_010 Hb_000529_240 Hb_000529_240 Hb_000275_040--Hb_000529_240 Hb_000670_030 Hb_000670_030 Hb_000275_040--Hb_000670_030 Hb_069022_010 Hb_069022_010 Hb_000275_040--Hb_069022_010 Hb_000567_040 Hb_000567_040 Hb_000275_040--Hb_000567_040 Hb_003209_030 Hb_003209_030 Hb_000275_040--Hb_003209_030 Hb_029982_010 Hb_029982_010 Hb_030619_010--Hb_029982_010 Hb_042404_010 Hb_042404_010 Hb_030619_010--Hb_042404_010 Hb_010680_010 Hb_010680_010 Hb_030619_010--Hb_010680_010 Hb_000331_310 Hb_000331_310 Hb_030619_010--Hb_000331_310 Hb_030619_010--Hb_003209_030 Hb_000529_240--Hb_003209_030 Hb_001495_060 Hb_001495_060 Hb_000529_240--Hb_001495_060 Hb_008667_050 Hb_008667_050 Hb_000529_240--Hb_008667_050 Hb_000331_320 Hb_000331_320 Hb_000529_240--Hb_000331_320 Hb_001047_140 Hb_001047_140 Hb_000529_240--Hb_001047_140 Hb_000453_210 Hb_000453_210 Hb_000529_240--Hb_000453_210 Hb_027428_030 Hb_027428_030 Hb_000670_030--Hb_027428_030 Hb_000670_030--Hb_030619_010 Hb_021576_060 Hb_021576_060 Hb_000670_030--Hb_021576_060 Hb_000373_190 Hb_000373_190 Hb_000670_030--Hb_000373_190 Hb_000253_030 Hb_000253_030 Hb_000670_030--Hb_000253_030 Hb_000445_190 Hb_000445_190 Hb_069022_010--Hb_000445_190 Hb_005714_050 Hb_005714_050 Hb_069022_010--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_069022_010--Hb_032974_010 Hb_000099_230 Hb_000099_230 Hb_069022_010--Hb_000099_230 Hb_000975_270 Hb_000975_270 Hb_069022_010--Hb_000975_270 Hb_000111_230 Hb_000111_230 Hb_069022_010--Hb_000111_230 Hb_000627_100 Hb_000627_100 Hb_000567_040--Hb_000627_100 Hb_000567_040--Hb_027428_030 Hb_001860_010 Hb_001860_010 Hb_000567_040--Hb_001860_010 Hb_000237_130 Hb_000237_130 Hb_000567_040--Hb_000237_130 Hb_008983_010 Hb_008983_010 Hb_000567_040--Hb_008983_010 Hb_010913_010 Hb_010913_010 Hb_000567_040--Hb_010913_010 Hb_003209_030--Hb_000331_320 Hb_003209_030--Hb_008667_050 Hb_003209_030--Hb_000453_210 Hb_003209_030--Hb_001495_060 Hb_003209_030--Hb_001047_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00977995 0.0281616 0 0.007198 0.0284061 0.00446421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0332343 0.0435904 0 0 0

CAGE analysis