Hb_000275_130

Information

Type -
Description -
Location Contig275: 186866-187443
Sequence    

Annotation

kegg
ID cic:CICLE_v10003066mg
description hypothetical protein
nr
ID XP_006432829.1
description hypothetical protein CICLE_v10003066mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4V2J0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003066mg PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein 706-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28810: 186822-198861
cDNA
(Sanger)
(ID:Location)		 038_L16.ab1: 186828-198810 , 050_A10.ab1: 186828-198779

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000275_130 0.0 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]
2 Hb_023732_060 0.1522939344 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
3 Hb_054074_010 0.1640768206 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
4 Hb_004421_020 0.1642208126 - - -
5 Hb_008699_020 0.1727459786 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
6 Hb_000096_130 0.174601316 - - hypothetical protein 23 [Hevea brasiliensis]
7 Hb_023386_010 0.1761160944 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
8 Hb_000451_060 0.1783971517 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
9 Hb_009659_010 0.1792263539 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
10 Hb_000836_140 0.1832100076 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
11 Hb_002828_040 0.1833738679 - - transmembrane protein, putative [Medicago truncatula]
12 Hb_003607_170 0.1853439356 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
13 Hb_000656_340 0.1859978883 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
14 Hb_021056_020 0.186658422 - - plasma membrane H+-ATPase [Hevea brasiliensis]
15 Hb_004871_020 0.1899045405 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
16 Hb_021924_010 0.192917704 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
17 Hb_003988_040 0.193313993 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
18 Hb_000212_470 0.2019420056 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
19 Hb_001019_080 0.202339302 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
20 Hb_000442_090 0.2051887763 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]

Gene co-expression network

sample Hb_000275_130 Hb_000275_130 Hb_023732_060 Hb_023732_060 Hb_000275_130--Hb_023732_060 Hb_054074_010 Hb_054074_010 Hb_000275_130--Hb_054074_010 Hb_004421_020 Hb_004421_020 Hb_000275_130--Hb_004421_020 Hb_008699_020 Hb_008699_020 Hb_000275_130--Hb_008699_020 Hb_000096_130 Hb_000096_130 Hb_000275_130--Hb_000096_130 Hb_023386_010 Hb_023386_010 Hb_000275_130--Hb_023386_010 Hb_000656_340 Hb_000656_340 Hb_023732_060--Hb_000656_340 Hb_021924_010 Hb_021924_010 Hb_023732_060--Hb_021924_010 Hb_003226_220 Hb_003226_220 Hb_023732_060--Hb_003226_220 Hb_000975_180 Hb_000975_180 Hb_023732_060--Hb_000975_180 Hb_003988_040 Hb_003988_040 Hb_023732_060--Hb_003988_040 Hb_023732_060--Hb_023386_010 Hb_054074_010--Hb_023386_010 Hb_001304_140 Hb_001304_140 Hb_054074_010--Hb_001304_140 Hb_010582_010 Hb_010582_010 Hb_054074_010--Hb_010582_010 Hb_000820_130 Hb_000820_130 Hb_054074_010--Hb_000820_130 Hb_054074_010--Hb_008699_020 Hb_001604_030 Hb_001604_030 Hb_054074_010--Hb_001604_030 Hb_009659_010 Hb_009659_010 Hb_004421_020--Hb_009659_010 Hb_004421_020--Hb_023732_060 Hb_004421_020--Hb_000656_340 Hb_004421_020--Hb_021924_010 Hb_006541_020 Hb_006541_020 Hb_004421_020--Hb_006541_020 Hb_001824_010 Hb_001824_010 Hb_008699_020--Hb_001824_010 Hb_008699_020--Hb_000820_130 Hb_002107_120 Hb_002107_120 Hb_008699_020--Hb_002107_120 Hb_001700_020 Hb_001700_020 Hb_008699_020--Hb_001700_020 Hb_000212_470 Hb_000212_470 Hb_008699_020--Hb_000212_470 Hb_007304_070 Hb_007304_070 Hb_008699_020--Hb_007304_070 Hb_000836_140 Hb_000836_140 Hb_000096_130--Hb_000836_140 Hb_013839_010 Hb_013839_010 Hb_000096_130--Hb_013839_010 Hb_002603_060 Hb_002603_060 Hb_000096_130--Hb_002603_060 Hb_002828_040 Hb_002828_040 Hb_000096_130--Hb_002828_040 Hb_002636_080 Hb_002636_080 Hb_000096_130--Hb_002636_080 Hb_021888_050 Hb_021888_050 Hb_000096_130--Hb_021888_050 Hb_023386_010--Hb_001604_030 Hb_023386_010--Hb_000820_130 Hb_023386_010--Hb_001304_140 Hb_000789_110 Hb_000789_110 Hb_023386_010--Hb_000789_110 Hb_004994_260 Hb_004994_260 Hb_023386_010--Hb_004994_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.2667 61.9479 53.281 115.535 10.2846 96.5514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
462.867 324.89 45.3447 103.581 16.0318

CAGE analysis