Hb_000277_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig277: 45574-49497
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID XP_006384740.1
description hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28953: 46050-46552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000277_030 0.0 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
2 Hb_005928_010 0.033599552 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
3 Hb_001002_020 0.0337403401 - - ATP binding protein, putative [Ricinus communis]
4 Hb_054165_010 0.0434745005 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
5 Hb_136973_020 0.0493257111 - - -
6 Hb_003847_090 0.0585125373 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
7 Hb_006083_010 0.0619980499 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
8 Hb_000248_080 0.0717939451 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_004788_030 0.0913682621 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
10 Hb_064885_010 0.0932099344 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
11 Hb_001410_040 0.0947259295 - - Protein ABIL2, putative [Ricinus communis]
12 Hb_172983_010 0.0986364622 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009385_010 0.1028479412 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
14 Hb_019429_020 0.1055223159 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_137862_020 0.1061663909 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
16 Hb_046610_010 0.1065879256 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_008821_030 0.1082523582 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
18 Hb_023712_020 0.1134631735 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
19 Hb_021142_030 0.1156715451 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
20 Hb_173029_010 0.121436032 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000277_030 Hb_000277_030 Hb_005928_010 Hb_005928_010 Hb_000277_030--Hb_005928_010 Hb_001002_020 Hb_001002_020 Hb_000277_030--Hb_001002_020 Hb_054165_010 Hb_054165_010 Hb_000277_030--Hb_054165_010 Hb_136973_020 Hb_136973_020 Hb_000277_030--Hb_136973_020 Hb_003847_090 Hb_003847_090 Hb_000277_030--Hb_003847_090 Hb_006083_010 Hb_006083_010 Hb_000277_030--Hb_006083_010 Hb_005928_010--Hb_001002_020 Hb_005928_010--Hb_136973_020 Hb_005928_010--Hb_054165_010 Hb_000248_080 Hb_000248_080 Hb_005928_010--Hb_000248_080 Hb_005928_010--Hb_003847_090 Hb_001002_020--Hb_054165_010 Hb_001002_020--Hb_136973_020 Hb_001002_020--Hb_003847_090 Hb_001002_020--Hb_006083_010 Hb_046610_010 Hb_046610_010 Hb_054165_010--Hb_046610_010 Hb_054165_010--Hb_006083_010 Hb_054165_010--Hb_136973_020 Hb_136973_020--Hb_000248_080 Hb_137862_020 Hb_137862_020 Hb_136973_020--Hb_137862_020 Hb_003847_090--Hb_006083_010 Hb_004788_030 Hb_004788_030 Hb_003847_090--Hb_004788_030 Hb_001410_040 Hb_001410_040 Hb_003847_090--Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_003847_090--Hb_009385_010 Hb_006083_010--Hb_001410_040 Hb_006083_010--Hb_004788_030 Hb_006083_010--Hb_009385_010 Hb_008821_030 Hb_008821_030 Hb_006083_010--Hb_008821_030 Hb_021142_030 Hb_021142_030 Hb_006083_010--Hb_021142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00497505 2.32895 4.16865 2.92644 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis