Hb_000277_040

Information

Type -
Description -
Location Contig277: 51595-51832
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000277_040 0.0 - - -
2 Hb_002186_120 0.0352914088 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
3 Hb_018671_010 0.0405341016 - - -
4 Hb_012545_020 0.0476493738 - - PREDICTED: uncharacterized protein LOC105633903 [Jatropha curcas]
5 Hb_000099_110 0.0493386131 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
6 Hb_000053_150 0.0612123271 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
7 Hb_010812_080 0.063103756 - - PREDICTED: methylesterase 17 [Jatropha curcas]
8 Hb_178968_010 0.0678046631 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
9 Hb_122079_010 0.0730854305 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
10 Hb_000224_050 0.0923742984 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000381_140 0.0959621726 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
12 Hb_093541_010 0.0991343238 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000087_110 0.0991432231 - - conserved hypothetical protein [Ricinus communis]
14 Hb_101724_010 0.0991452929 - - glutamate receptor family protein [Populus trichocarpa]
15 Hb_006198_160 0.099366287 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
16 Hb_005081_050 0.0994730934 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
17 Hb_015447_010 0.0995410925 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
18 Hb_004137_090 0.0995671291 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
19 Hb_073680_010 0.0996424489 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
20 Hb_157950_010 0.099653859 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000277_040 Hb_000277_040 Hb_002186_120 Hb_002186_120 Hb_000277_040--Hb_002186_120 Hb_018671_010 Hb_018671_010 Hb_000277_040--Hb_018671_010 Hb_012545_020 Hb_012545_020 Hb_000277_040--Hb_012545_020 Hb_000099_110 Hb_000099_110 Hb_000277_040--Hb_000099_110 Hb_000053_150 Hb_000053_150 Hb_000277_040--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_000277_040--Hb_010812_080 Hb_002186_120--Hb_018671_010 Hb_178968_010 Hb_178968_010 Hb_002186_120--Hb_178968_010 Hb_002186_120--Hb_000053_150 Hb_000224_050 Hb_000224_050 Hb_002186_120--Hb_000224_050 Hb_003540_010 Hb_003540_010 Hb_002186_120--Hb_003540_010 Hb_018671_010--Hb_178968_010 Hb_018671_010--Hb_000053_150 Hb_018671_010--Hb_003540_010 Hb_018671_010--Hb_000224_050 Hb_012545_020--Hb_000099_110 Hb_012545_020--Hb_010812_080 Hb_006198_160 Hb_006198_160 Hb_012545_020--Hb_006198_160 Hb_015447_010 Hb_015447_010 Hb_012545_020--Hb_015447_010 Hb_101724_010 Hb_101724_010 Hb_012545_020--Hb_101724_010 Hb_000099_110--Hb_010812_080 Hb_000087_110 Hb_000087_110 Hb_000099_110--Hb_000087_110 Hb_093541_010 Hb_093541_010 Hb_000099_110--Hb_093541_010 Hb_000099_110--Hb_101724_010 Hb_000053_150--Hb_178968_010 Hb_122079_010 Hb_122079_010 Hb_000053_150--Hb_122079_010 Hb_005057_020 Hb_005057_020 Hb_000053_150--Hb_005057_020 Hb_000053_150--Hb_010812_080 Hb_010812_080--Hb_122079_010 Hb_061335_010 Hb_061335_010 Hb_010812_080--Hb_061335_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.08906 5.66543 49.0491 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis