Hb_000277_060

Information

Type -
Description -
Location Contig277: 70461-76341
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID XP_006384740.1
description hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28956: 75379-75789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000277_060 0.0 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
2 Hb_002387_080 0.2305583178 - - hypothetical protein JCGZ_25275 [Jatropha curcas]
3 Hb_000072_330 0.2759498341 - - conserved hypothetical protein [Ricinus communis]
4 Hb_020400_040 0.2802495983 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
5 Hb_000179_240 0.2817632771 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
6 Hb_002110_240 0.2821145619 - - clathrin assembly protein, putative [Ricinus communis]
7 Hb_000634_070 0.2832996201 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
8 Hb_003038_010 0.2875498351 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_003078_050 0.2891275424 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
10 Hb_000638_210 0.2891577282 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
11 Hb_000975_330 0.2904845329 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
12 Hb_000483_040 0.2905288912 - - Cell division protein ftsH, putative [Ricinus communis]
13 Hb_001472_130 0.2915687952 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
14 Hb_002205_010 0.2940634275 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
15 Hb_065500_040 0.2953397693 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000009_310 0.2958663484 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002316_040 0.2992966353 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_001059_020 0.3005058125 - - PREDICTED: FBD-associated F-box protein At4g10400-like [Malus domestica]
19 Hb_003097_100 0.3016020438 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
20 Hb_005276_170 0.3018721716 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000277_060 Hb_000277_060 Hb_002387_080 Hb_002387_080 Hb_000277_060--Hb_002387_080 Hb_000072_330 Hb_000072_330 Hb_000277_060--Hb_000072_330 Hb_020400_040 Hb_020400_040 Hb_000277_060--Hb_020400_040 Hb_000179_240 Hb_000179_240 Hb_000277_060--Hb_000179_240 Hb_002110_240 Hb_002110_240 Hb_000277_060--Hb_002110_240 Hb_000634_070 Hb_000634_070 Hb_000277_060--Hb_000634_070 Hb_008246_090 Hb_008246_090 Hb_002387_080--Hb_008246_090 Hb_000483_040 Hb_000483_040 Hb_002387_080--Hb_000483_040 Hb_003494_060 Hb_003494_060 Hb_002387_080--Hb_003494_060 Hb_002387_080--Hb_000179_240 Hb_012725_040 Hb_012725_040 Hb_002387_080--Hb_012725_040 Hb_007218_140 Hb_007218_140 Hb_000072_330--Hb_007218_140 Hb_000574_120 Hb_000574_120 Hb_000072_330--Hb_000574_120 Hb_000975_330 Hb_000975_330 Hb_000072_330--Hb_000975_330 Hb_004324_290 Hb_004324_290 Hb_000072_330--Hb_004324_290 Hb_015978_030 Hb_015978_030 Hb_000072_330--Hb_015978_030 Hb_065500_040 Hb_065500_040 Hb_000072_330--Hb_065500_040 Hb_002205_010 Hb_002205_010 Hb_020400_040--Hb_002205_010 Hb_006096_010 Hb_006096_010 Hb_020400_040--Hb_006096_010 Hb_012760_010 Hb_012760_010 Hb_020400_040--Hb_012760_010 Hb_020400_040--Hb_002110_240 Hb_156850_080 Hb_156850_080 Hb_020400_040--Hb_156850_080 Hb_001123_200 Hb_001123_200 Hb_020400_040--Hb_001123_200 Hb_002685_200 Hb_002685_200 Hb_000179_240--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_002053_130 Hb_002053_130 Hb_000179_240--Hb_002053_130 Hb_000084_240 Hb_000084_240 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_000179_240--Hb_002205_010 Hb_002110_240--Hb_002205_010 Hb_008173_030 Hb_008173_030 Hb_002110_240--Hb_008173_030 Hb_000256_130 Hb_000256_130 Hb_002110_240--Hb_000256_130 Hb_000343_180 Hb_000343_180 Hb_002110_240--Hb_000343_180 Hb_009233_030 Hb_009233_030 Hb_002110_240--Hb_009233_030 Hb_003078_050 Hb_003078_050 Hb_000634_070--Hb_003078_050 Hb_003097_100 Hb_003097_100 Hb_000634_070--Hb_003097_100 Hb_000069_230 Hb_000069_230 Hb_000634_070--Hb_000069_230 Hb_000953_050 Hb_000953_050 Hb_000634_070--Hb_000953_050 Hb_001205_030 Hb_001205_030 Hb_000634_070--Hb_001205_030 Hb_028207_040 Hb_028207_040 Hb_000634_070--Hb_028207_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.112499 0.0213449 0.00495481 0.00665589 0.0128557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0322682 0.012696 0.0242436 0.00503869 0

CAGE analysis