Hb_000280_030

Information

Type transcription factor
Description TF Family: NAC
Location Contig280: 60532-62612
Sequence    

Annotation

kegg
ID rcu:RCOM_1298710
description NAC domain-containing protein, putative
nr
ID XP_012078844.1
description PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
swissprot
ID Q9FIW5
description Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=3 SV=1
trembl
ID R4N5L6
description NAC transcription factor 036 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29249: 61033-62133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000280_030 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
2 Hb_004374_100 0.0557184439 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
3 Hb_000638_270 0.0625903007 - - -
4 Hb_000042_310 0.0683493052 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
5 Hb_015824_010 0.1004331939 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
6 Hb_000705_010 0.1051855533 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
7 Hb_002025_220 0.1115088298 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_000227_260 0.1152506222 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
9 Hb_144045_010 0.1166861471 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
10 Hb_080922_010 0.127642658 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_003536_020 0.1360710243 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
12 Hb_003106_160 0.1361384921 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
13 Hb_001102_130 0.1370855713 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
14 Hb_061126_010 0.1376039884 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
15 Hb_008143_010 0.1392572554 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
16 Hb_000116_090 0.1433627758 - - catalase [Hevea brasiliensis]
17 Hb_001172_150 0.1440583624 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
18 Hb_002010_030 0.1492299854 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
19 Hb_001953_110 0.1510907652 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
20 Hb_000697_020 0.1517499259 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000280_030 Hb_000280_030 Hb_004374_100 Hb_004374_100 Hb_000280_030--Hb_004374_100 Hb_000638_270 Hb_000638_270 Hb_000280_030--Hb_000638_270 Hb_000042_310 Hb_000042_310 Hb_000280_030--Hb_000042_310 Hb_015824_010 Hb_015824_010 Hb_000280_030--Hb_015824_010 Hb_000705_010 Hb_000705_010 Hb_000280_030--Hb_000705_010 Hb_002025_220 Hb_002025_220 Hb_000280_030--Hb_002025_220 Hb_004374_100--Hb_000042_310 Hb_004374_100--Hb_015824_010 Hb_004374_100--Hb_000638_270 Hb_004374_100--Hb_000705_010 Hb_144045_010 Hb_144045_010 Hb_004374_100--Hb_144045_010 Hb_000638_270--Hb_002025_220 Hb_000638_270--Hb_000042_310 Hb_003106_160 Hb_003106_160 Hb_000638_270--Hb_003106_160 Hb_000227_260 Hb_000227_260 Hb_000638_270--Hb_000227_260 Hb_000042_310--Hb_015824_010 Hb_000042_310--Hb_144045_010 Hb_000042_310--Hb_000705_010 Hb_015824_010--Hb_144045_010 Hb_000027_110 Hb_000027_110 Hb_015824_010--Hb_000027_110 Hb_000207_160 Hb_000207_160 Hb_015824_010--Hb_000207_160 Hb_063405_010 Hb_063405_010 Hb_000705_010--Hb_063405_010 Hb_080922_010 Hb_080922_010 Hb_000705_010--Hb_080922_010 Hb_000270_090 Hb_000270_090 Hb_000705_010--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_000705_010--Hb_001321_010 Hb_000697_020 Hb_000697_020 Hb_000705_010--Hb_000697_020 Hb_002010_030 Hb_002010_030 Hb_000705_010--Hb_002010_030 Hb_005305_140 Hb_005305_140 Hb_002025_220--Hb_005305_140 Hb_004109_140 Hb_004109_140 Hb_002025_220--Hb_004109_140 Hb_011930_060 Hb_011930_060 Hb_002025_220--Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_002025_220--Hb_000834_170 Hb_000809_190 Hb_000809_190 Hb_002025_220--Hb_000809_190 Hb_000445_270 Hb_000445_270 Hb_002025_220--Hb_000445_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.30127 12.6277 1.09854 0 0.0173161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0381368 0.0300001 0 1.50082 18.3671

CAGE analysis