Hb_000280_100

Information

Type -
Description -
Location Contig280: 162431-163731
Sequence    

Annotation

kegg
ID rcu:RCOM_1299060
description ATRAD3, putative
nr
ID KDP32453.1
description hypothetical protein JCGZ_13378 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13378 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000280_100 0.0 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
2 Hb_001143_200 0.1094880964 transcription factor TF Family: NAC NAC domain protein [Glycine max]
3 Hb_012633_010 0.1192235184 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
4 Hb_000042_020 0.1196191962 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_002435_010 0.1211362455 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
6 Hb_003935_050 0.1244349653 - - protein with unknown function [Ricinus communis]
7 Hb_027065_010 0.1406702668 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
8 Hb_103709_010 0.1417660066 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
9 Hb_163140_010 0.1434401301 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
10 Hb_007919_070 0.1441760701 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
11 Hb_149985_030 0.1467824384 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
12 Hb_127372_010 0.1490771274 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
13 Hb_005695_070 0.1492384552 - - Cysteine-rich RLK 29 [Theobroma cacao]
14 Hb_002534_040 0.1537363707 - - Calmodulin, putative [Ricinus communis]
15 Hb_000340_070 0.1540299194 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
16 Hb_000069_250 0.1551271276 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
17 Hb_003207_220 0.1555760992 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
18 Hb_010578_020 0.1556074289 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_012084_010 0.1571606539 - - cold regulated protein [Manihot esculenta]
20 Hb_004650_040 0.1584885425 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]

Gene co-expression network

sample Hb_000280_100 Hb_000280_100 Hb_001143_200 Hb_001143_200 Hb_000280_100--Hb_001143_200 Hb_012633_010 Hb_012633_010 Hb_000280_100--Hb_012633_010 Hb_000042_020 Hb_000042_020 Hb_000280_100--Hb_000042_020 Hb_002435_010 Hb_002435_010 Hb_000280_100--Hb_002435_010 Hb_003935_050 Hb_003935_050 Hb_000280_100--Hb_003935_050 Hb_027065_010 Hb_027065_010 Hb_000280_100--Hb_027065_010 Hb_001143_200--Hb_000042_020 Hb_001143_200--Hb_003935_050 Hb_001040_050 Hb_001040_050 Hb_001143_200--Hb_001040_050 Hb_007441_290 Hb_007441_290 Hb_001143_200--Hb_007441_290 Hb_000388_040 Hb_000388_040 Hb_001143_200--Hb_000388_040 Hb_002447_060 Hb_002447_060 Hb_012633_010--Hb_002447_060 Hb_002079_100 Hb_002079_100 Hb_012633_010--Hb_002079_100 Hb_006519_020 Hb_006519_020 Hb_012633_010--Hb_006519_020 Hb_012633_010--Hb_001040_050 Hb_000505_030 Hb_000505_030 Hb_012633_010--Hb_000505_030 Hb_163140_010 Hb_163140_010 Hb_012633_010--Hb_163140_010 Hb_116420_050 Hb_116420_050 Hb_000042_020--Hb_116420_050 Hb_000042_020--Hb_027065_010 Hb_007101_250 Hb_007101_250 Hb_000042_020--Hb_007101_250 Hb_127372_010 Hb_127372_010 Hb_000042_020--Hb_127372_010 Hb_052764_120 Hb_052764_120 Hb_002435_010--Hb_052764_120 Hb_002267_010 Hb_002267_010 Hb_002435_010--Hb_002267_010 Hb_010578_020 Hb_010578_020 Hb_002435_010--Hb_010578_020 Hb_003207_220 Hb_003207_220 Hb_002435_010--Hb_003207_220 Hb_048141_060 Hb_048141_060 Hb_002435_010--Hb_048141_060 Hb_000668_190 Hb_000668_190 Hb_002435_010--Hb_000668_190 Hb_005695_070 Hb_005695_070 Hb_003935_050--Hb_005695_070 Hb_003935_050--Hb_163140_010 Hb_007919_070 Hb_007919_070 Hb_003935_050--Hb_007919_070 Hb_028187_010 Hb_028187_010 Hb_003935_050--Hb_028187_010 Hb_027065_010--Hb_116420_050 Hb_027065_010--Hb_127372_010 Hb_001361_010 Hb_001361_010 Hb_027065_010--Hb_001361_010 Hb_027065_010--Hb_003207_220 Hb_000866_430 Hb_000866_430 Hb_027065_010--Hb_000866_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.346911 1.91199 0.125515 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0417769 0.0715518

CAGE analysis