Hb_000280_120

Information

Type -
Description -
Location Contig280: 168309-171895
Sequence    

Annotation

kegg
ID tcc:TCM_022738
description DNA/RNA polymerases superfamily protein
nr
ID XP_012084569.1
description PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EU87
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_022738 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000280_120 0.0 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
2 Hb_138667_010 0.0335096094 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
3 Hb_000243_050 0.0406849948 - - ADP-ribosylation factor, putative [Ricinus communis]
4 Hb_168909_010 0.0660064459 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
5 Hb_028872_040 0.0724391746 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_003938_100 0.0937383618 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006013_030 0.0990831217 - - -
8 Hb_002733_050 0.1028233259 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_114121_010 0.1064453977 - - -
10 Hb_007709_020 0.1098495444 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
11 Hb_001301_070 0.1114561605 - - -
12 Hb_002585_060 0.1246580875 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
13 Hb_002142_010 0.1326593338 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000192_060 0.1351216366 - - -
15 Hb_000959_370 0.1401088384 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
16 Hb_179183_010 0.1530852215 - - RALF-LIKE 32 family protein [Populus trichocarpa]
17 Hb_151411_010 0.1548849395 - - -
18 Hb_000209_010 0.1566837757 - - -
19 Hb_011242_070 0.1688909208 - - beta-cyanoalanine synthase [Hevea brasiliensis]
20 Hb_038190_030 0.1698598342 - - -

Gene co-expression network

sample Hb_000280_120 Hb_000280_120 Hb_138667_010 Hb_138667_010 Hb_000280_120--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_000280_120--Hb_000243_050 Hb_168909_010 Hb_168909_010 Hb_000280_120--Hb_168909_010 Hb_028872_040 Hb_028872_040 Hb_000280_120--Hb_028872_040 Hb_003938_100 Hb_003938_100 Hb_000280_120--Hb_003938_100 Hb_006013_030 Hb_006013_030 Hb_000280_120--Hb_006013_030 Hb_138667_010--Hb_000243_050 Hb_138667_010--Hb_028872_040 Hb_138667_010--Hb_003938_100 Hb_007709_020 Hb_007709_020 Hb_138667_010--Hb_007709_020 Hb_138667_010--Hb_168909_010 Hb_000243_050--Hb_003938_100 Hb_000243_050--Hb_168909_010 Hb_001301_070 Hb_001301_070 Hb_000243_050--Hb_001301_070 Hb_000243_050--Hb_028872_040 Hb_114121_010 Hb_114121_010 Hb_168909_010--Hb_114121_010 Hb_002733_050 Hb_002733_050 Hb_168909_010--Hb_002733_050 Hb_168909_010--Hb_001301_070 Hb_179183_010 Hb_179183_010 Hb_168909_010--Hb_179183_010 Hb_028872_040--Hb_007709_020 Hb_002142_010 Hb_002142_010 Hb_028872_040--Hb_002142_010 Hb_028872_040--Hb_003938_100 Hb_038190_030 Hb_038190_030 Hb_003938_100--Hb_038190_030 Hb_003938_100--Hb_001301_070 Hb_002056_140 Hb_002056_140 Hb_003938_100--Hb_002056_140 Hb_006013_030--Hb_002733_050 Hb_006013_030--Hb_114121_010 Hb_000959_370 Hb_000959_370 Hb_006013_030--Hb_000959_370 Hb_006013_030--Hb_168909_010 Hb_020400_010 Hb_020400_010 Hb_006013_030--Hb_020400_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0422497 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0321947 0.0559937

CAGE analysis