Hb_000281_100

Information

Type -
Description -
Location Contig281: 99817-102797
Sequence    

Annotation

kegg
ID gmx:100796609
description putative RNA methyltransferase At5g10620-like
nr
ID XP_012076299.1
description PREDICTED: putative RNA methyltransferase At5g10620 [Jatropha curcas]
swissprot
ID Q9LXB4
description Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE=3 SV=1
trembl
ID A0A067KNM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06990 PE=3 SV=1
Gene Ontology
ID GO:0005737
description rna methyltransferase at5g10620

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29350: 99718-102717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000281_100 0.0 - - PREDICTED: putative RNA methyltransferase At5g10620 [Jatropha curcas]
2 Hb_000088_200 0.1021793697 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_003006_060 0.1031397008 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
4 Hb_171900_100 0.1040260222 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
5 Hb_000042_210 0.1041188768 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
6 Hb_004195_280 0.1079854788 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
7 Hb_004993_010 0.1085057439 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
8 Hb_000567_360 0.1101480657 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
9 Hb_000923_040 0.1105211851 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
10 Hb_005237_060 0.1136058244 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
11 Hb_000997_020 0.1136981084 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
12 Hb_000540_140 0.1148636949 - - zinc binding dehydrogenase, putative [Ricinus communis]
13 Hb_002587_020 0.1172290849 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_003044_100 0.1188529628 - - hypothetical protein F383_08446 [Gossypium arboreum]
15 Hb_024714_020 0.1221208018 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_008887_050 0.124087184 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
17 Hb_003126_040 0.1250665584 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008143_030 0.1262690326 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
19 Hb_005322_030 0.1270939689 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
20 Hb_000046_300 0.1273777028 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000281_100 Hb_000281_100 Hb_000088_200 Hb_000088_200 Hb_000281_100--Hb_000088_200 Hb_003006_060 Hb_003006_060 Hb_000281_100--Hb_003006_060 Hb_171900_100 Hb_171900_100 Hb_000281_100--Hb_171900_100 Hb_000042_210 Hb_000042_210 Hb_000281_100--Hb_000042_210 Hb_004195_280 Hb_004195_280 Hb_000281_100--Hb_004195_280 Hb_004993_010 Hb_004993_010 Hb_000281_100--Hb_004993_010 Hb_004044_020 Hb_004044_020 Hb_000088_200--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000088_200--Hb_004525_100 Hb_000236_280 Hb_000236_280 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100 Hb_000175_390 Hb_000175_390 Hb_000088_200--Hb_000175_390 Hb_002942_080 Hb_002942_080 Hb_003006_060--Hb_002942_080 Hb_004678_060 Hb_004678_060 Hb_003006_060--Hb_004678_060 Hb_000104_080 Hb_000104_080 Hb_003006_060--Hb_000104_080 Hb_010423_020 Hb_010423_020 Hb_003006_060--Hb_010423_020 Hb_008143_030 Hb_008143_030 Hb_003006_060--Hb_008143_030 Hb_009265_080 Hb_009265_080 Hb_003006_060--Hb_009265_080 Hb_171900_100--Hb_004195_280 Hb_143629_010 Hb_143629_010 Hb_171900_100--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_171900_100--Hb_031939_010 Hb_008887_050 Hb_008887_050 Hb_171900_100--Hb_008887_050 Hb_000236_320 Hb_000236_320 Hb_171900_100--Hb_000236_320 Hb_002007_350 Hb_002007_350 Hb_171900_100--Hb_002007_350 Hb_001352_090 Hb_001352_090 Hb_000042_210--Hb_001352_090 Hb_000923_040 Hb_000923_040 Hb_000042_210--Hb_000923_040 Hb_000042_210--Hb_008887_050 Hb_003126_040 Hb_003126_040 Hb_000042_210--Hb_003126_040 Hb_006623_020 Hb_006623_020 Hb_000042_210--Hb_006623_020 Hb_002174_060 Hb_002174_060 Hb_004195_280--Hb_002174_060 Hb_004195_280--Hb_010423_020 Hb_004195_280--Hb_009265_080 Hb_004195_280--Hb_003006_060 Hb_000179_020 Hb_000179_020 Hb_004195_280--Hb_000179_020 Hb_150528_010 Hb_150528_010 Hb_004993_010--Hb_150528_010 Hb_041091_010 Hb_041091_010 Hb_004993_010--Hb_041091_010 Hb_185467_010 Hb_185467_010 Hb_004993_010--Hb_185467_010 Hb_007786_010 Hb_007786_010 Hb_004993_010--Hb_007786_010 Hb_004852_030 Hb_004852_030 Hb_004993_010--Hb_004852_030 Hb_001416_040 Hb_001416_040 Hb_004993_010--Hb_001416_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4039 2.53213 8.54905 1.84543 19.9617 18.4153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.4235 7.64127 8.15896 3.93055 5.43253

CAGE analysis