Hb_000282_020

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig282: 52437-53922
Sequence    

Annotation

kegg
ID rcu:RCOM_0797750
description hypothetical protein
nr
ID XP_002516455.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID B9RRT6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0797750 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb1r1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29511: 52241-54079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000282_020 0.0 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
2 Hb_019053_040 0.0541920121 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000069_440 0.0551044989 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
4 Hb_004411_010 0.0584345731 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
5 Hb_000005_060 0.0621528088 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
6 Hb_023582_010 0.0652517215 - - conserved hypothetical protein [Ricinus communis]
7 Hb_023827_030 0.068628031 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
8 Hb_001166_010 0.0686282534 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
9 Hb_001266_010 0.0698864539 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
10 Hb_007853_030 0.0706503367 - - structural molecule, putative [Ricinus communis]
11 Hb_179129_010 0.0760677943 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
12 Hb_000069_220 0.0781867762 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
13 Hb_048141_050 0.0812203552 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
14 Hb_105148_020 0.0826526715 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
15 Hb_016371_010 0.0836241627 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
16 Hb_000236_130 0.0841980961 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
17 Hb_004346_050 0.0843110246 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
18 Hb_022167_010 0.0845799069 - - Kinase, putative isoform 2 [Theobroma cacao]
19 Hb_009476_030 0.0850395854 - - fatty acid desaturase [Manihot esculenta]
20 Hb_001424_010 0.0850929261 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000282_020 Hb_000282_020 Hb_019053_040 Hb_019053_040 Hb_000282_020--Hb_019053_040 Hb_000069_440 Hb_000069_440 Hb_000282_020--Hb_000069_440 Hb_004411_010 Hb_004411_010 Hb_000282_020--Hb_004411_010 Hb_000005_060 Hb_000005_060 Hb_000282_020--Hb_000005_060 Hb_023582_010 Hb_023582_010 Hb_000282_020--Hb_023582_010 Hb_023827_030 Hb_023827_030 Hb_000282_020--Hb_023827_030 Hb_019053_040--Hb_023582_010 Hb_001166_010 Hb_001166_010 Hb_019053_040--Hb_001166_010 Hb_105148_020 Hb_105148_020 Hb_019053_040--Hb_105148_020 Hb_019053_040--Hb_023827_030 Hb_002066_100 Hb_002066_100 Hb_019053_040--Hb_002066_100 Hb_000069_440--Hb_004411_010 Hb_007853_030 Hb_007853_030 Hb_000069_440--Hb_007853_030 Hb_000069_440--Hb_023827_030 Hb_000069_220 Hb_000069_220 Hb_000069_440--Hb_000069_220 Hb_001266_010 Hb_001266_010 Hb_000069_440--Hb_001266_010 Hb_004411_010--Hb_000069_220 Hb_000697_030 Hb_000697_030 Hb_004411_010--Hb_000697_030 Hb_016371_010 Hb_016371_010 Hb_004411_010--Hb_016371_010 Hb_004411_010--Hb_007853_030 Hb_000005_060--Hb_001266_010 Hb_000005_060--Hb_000069_440 Hb_000005_060--Hb_023582_010 Hb_000005_060--Hb_023827_030 Hb_000005_060--Hb_004411_010 Hb_000722_030 Hb_000722_030 Hb_023582_010--Hb_000722_030 Hb_016297_010 Hb_016297_010 Hb_023582_010--Hb_016297_010 Hb_023582_010--Hb_105148_020 Hb_023827_030--Hb_016297_010 Hb_023827_030--Hb_023582_010 Hb_023827_030--Hb_105148_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.76586 56.3039 17.6337 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0647994 0 0 0.556273 32.4187

CAGE analysis