Hb_000282_080

Information

Type -
Description -
Location Contig282: 134745-137790
Sequence    

Annotation

kegg
ID rcu:RCOM_0797580
description hypothetical protein
nr
ID XP_002516448.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P51273
description Uncharacterized protein ycf36 OS=Porphyra purpurea GN=ycf36 PE=3 SV=1
trembl
ID B9RRS9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0797580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29523: 134778-137405 , PASA_asmbl_29524: 134962-137452 , PASA_asmbl_29525: 134996-135347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000282_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005511_140 0.068196053 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
3 Hb_001195_450 0.0843206115 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
4 Hb_001314_080 0.0950331409 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
5 Hb_002758_010 0.0966151532 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
6 Hb_000023_260 0.0972523986 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
7 Hb_001080_090 0.0997342522 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
8 Hb_000340_150 0.0998257188 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
9 Hb_001163_060 0.1000633195 - - neutral/alkaline invertase [Manihot esculenta]
10 Hb_012627_040 0.1004430523 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
11 Hb_009778_060 0.1005332682 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
12 Hb_000340_040 0.1013006578 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
13 Hb_012150_030 0.1050948088 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_000193_330 0.1054103994 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
15 Hb_001589_010 0.1061142608 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
16 Hb_005116_050 0.1061606347 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_005731_160 0.1064337753 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_008421_020 0.1065457695 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
19 Hb_000130_320 0.1070708344 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
20 Hb_002205_230 0.108302677 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000282_080 Hb_000282_080 Hb_005511_140 Hb_005511_140 Hb_000282_080--Hb_005511_140 Hb_001195_450 Hb_001195_450 Hb_000282_080--Hb_001195_450 Hb_001314_080 Hb_001314_080 Hb_000282_080--Hb_001314_080 Hb_002758_010 Hb_002758_010 Hb_000282_080--Hb_002758_010 Hb_000023_260 Hb_000023_260 Hb_000282_080--Hb_000023_260 Hb_001080_090 Hb_001080_090 Hb_000282_080--Hb_001080_090 Hb_000340_040 Hb_000340_040 Hb_005511_140--Hb_000340_040 Hb_000023_360 Hb_000023_360 Hb_005511_140--Hb_000023_360 Hb_005511_140--Hb_001195_450 Hb_000169_020 Hb_000169_020 Hb_005511_140--Hb_000169_020 Hb_073973_090 Hb_073973_090 Hb_005511_140--Hb_073973_090 Hb_001723_060 Hb_001723_060 Hb_001195_450--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001195_450--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001195_450--Hb_009778_060 Hb_012150_030 Hb_012150_030 Hb_001195_450--Hb_012150_030 Hb_010883_040 Hb_010883_040 Hb_001314_080--Hb_010883_040 Hb_001314_080--Hb_000023_260 Hb_015934_120 Hb_015934_120 Hb_001314_080--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_001314_080--Hb_001504_030 Hb_000212_230 Hb_000212_230 Hb_001314_080--Hb_000212_230 Hb_000665_130 Hb_000665_130 Hb_001314_080--Hb_000665_130 Hb_000130_320 Hb_000130_320 Hb_002758_010--Hb_000130_320 Hb_002205_230 Hb_002205_230 Hb_002758_010--Hb_002205_230 Hb_005731_160 Hb_005731_160 Hb_002758_010--Hb_005731_160 Hb_001936_090 Hb_001936_090 Hb_002758_010--Hb_001936_090 Hb_005253_030 Hb_005253_030 Hb_002758_010--Hb_005253_030 Hb_001589_010 Hb_001589_010 Hb_002758_010--Hb_001589_010 Hb_000375_390 Hb_000375_390 Hb_000023_260--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_000023_260--Hb_000061_180 Hb_000023_260--Hb_000212_230 Hb_133702_010 Hb_133702_010 Hb_000023_260--Hb_133702_010 Hb_007975_060 Hb_007975_060 Hb_000023_260--Hb_007975_060 Hb_004899_260 Hb_004899_260 Hb_001080_090--Hb_004899_260 Hb_001790_080 Hb_001790_080 Hb_001080_090--Hb_001790_080 Hb_000130_260 Hb_000130_260 Hb_001080_090--Hb_000130_260 Hb_001080_090--Hb_001589_010 Hb_001080_090--Hb_002758_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57547 8.62647 8.86237 7.45182 5.05704 5.88809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1939 7.98572 6.65513 5.01802 19.8998

CAGE analysis