Hb_000282_090

Information

Type -
Description -
Location Contig282: 142656-150899
Sequence    

Annotation

kegg
ID rcu:RCOM_0797570
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012077291.1
description PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067KD95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07673 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase edr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29526: 142567-147153 , PASA_asmbl_29527: 150458-150578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000282_090 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
2 Hb_002110_160 0.0582814944 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
3 Hb_000207_200 0.070479032 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
4 Hb_004870_050 0.0720055823 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
5 Hb_000089_210 0.0721802638 - - unknown [Medicago truncatula]
6 Hb_002716_060 0.0739423292 - - carboxylesterase np, putative [Ricinus communis]
7 Hb_002413_010 0.0744801923 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000868_120 0.0750347854 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
9 Hb_033642_120 0.0757684429 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
10 Hb_000975_210 0.0768837927 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
11 Hb_002435_100 0.0785523621 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
12 Hb_010287_020 0.0792922215 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
13 Hb_000111_170 0.0815752837 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
14 Hb_000085_210 0.0822186826 - - DNA topoisomerase type I, putative [Ricinus communis]
15 Hb_004994_240 0.0825550308 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
16 Hb_001623_270 0.0825964744 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
17 Hb_004109_320 0.0834406405 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
18 Hb_000445_060 0.0836353321 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
19 Hb_001300_010 0.084336131 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000352_350 0.0853904646 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000282_090 Hb_000282_090 Hb_002110_160 Hb_002110_160 Hb_000282_090--Hb_002110_160 Hb_000207_200 Hb_000207_200 Hb_000282_090--Hb_000207_200 Hb_004870_050 Hb_004870_050 Hb_000282_090--Hb_004870_050 Hb_000089_210 Hb_000089_210 Hb_000282_090--Hb_000089_210 Hb_002716_060 Hb_002716_060 Hb_000282_090--Hb_002716_060 Hb_002413_010 Hb_002413_010 Hb_000282_090--Hb_002413_010 Hb_010775_030 Hb_010775_030 Hb_002110_160--Hb_010775_030 Hb_010287_020 Hb_010287_020 Hb_002110_160--Hb_010287_020 Hb_002110_160--Hb_000207_200 Hb_002110_160--Hb_004870_050 Hb_000868_120 Hb_000868_120 Hb_002110_160--Hb_000868_120 Hb_003470_040 Hb_003470_040 Hb_000207_200--Hb_003470_040 Hb_002909_040 Hb_002909_040 Hb_000207_200--Hb_002909_040 Hb_000207_200--Hb_000089_210 Hb_033642_120 Hb_033642_120 Hb_000207_200--Hb_033642_120 Hb_029695_080 Hb_029695_080 Hb_000207_200--Hb_029695_080 Hb_060094_020 Hb_060094_020 Hb_004870_050--Hb_060094_020 Hb_003927_040 Hb_003927_040 Hb_004870_050--Hb_003927_040 Hb_000094_090 Hb_000094_090 Hb_004870_050--Hb_000094_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_000089_210--Hb_002909_040 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_004096_160 Hb_004096_160 Hb_000089_210--Hb_004096_160 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030 Hb_001025_120 Hb_001025_120 Hb_002716_060--Hb_001025_120 Hb_018790_020 Hb_018790_020 Hb_002716_060--Hb_018790_020 Hb_000476_060 Hb_000476_060 Hb_002716_060--Hb_000476_060 Hb_004109_320 Hb_004109_320 Hb_002716_060--Hb_004109_320 Hb_043792_010 Hb_043792_010 Hb_002716_060--Hb_043792_010 Hb_183433_010 Hb_183433_010 Hb_002413_010--Hb_183433_010 Hb_027905_020 Hb_027905_020 Hb_002413_010--Hb_027905_020 Hb_002572_020 Hb_002572_020 Hb_002413_010--Hb_002572_020 Hb_007248_030 Hb_007248_030 Hb_002413_010--Hb_007248_030 Hb_003912_040 Hb_003912_040 Hb_002413_010--Hb_003912_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.29532 9.3401 11.2842 7.15286 6.09072 4.21078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85905 6.45578 4.12099 5.26783 7.90771

CAGE analysis