Hb_000282_110

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig282: 179315-180986
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24560g
description POPTRDRAFT_653902; hypothetical protein
nr
ID XP_002308561.2
description hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
swissprot
ID Q9SZI6
description Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=3 SV=1
trembl
ID A9PGX1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s24560g PE=2 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29531: 179361-181080
cDNA
(Sanger)
(ID:Location)		 015_C10.ab1: 179835-181010 , 030_A19.ab1: 180087-181080 , 050_N09.ab1: 180241-181085

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000282_110 0.0 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
2 Hb_013818_020 0.0214449479 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
3 Hb_007416_250 0.0287729097 - - -
4 Hb_013405_240 0.03224312 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
5 Hb_003208_010 0.0332240383 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_000762_050 0.0443165067 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
7 Hb_003251_010 0.0478594787 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
8 Hb_000398_110 0.0520435867 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
9 Hb_000977_260 0.0538200596 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
10 Hb_000003_530 0.058128309 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
11 Hb_000029_150 0.0594707699 - - conserved hypothetical protein [Ricinus communis]
12 Hb_020805_090 0.0624687519 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
13 Hb_004116_030 0.0629491673 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
14 Hb_000243_190 0.0642185541 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
15 Hb_016334_010 0.0644396123 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
16 Hb_000083_010 0.0680828412 - - -
17 Hb_005736_030 0.0693716497 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
18 Hb_002161_010 0.0733115536 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
19 Hb_001089_120 0.0741108897 - - PREDICTED: pectinesterase [Jatropha curcas]
20 Hb_101097_010 0.0749824655 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_000282_110 Hb_000282_110 Hb_013818_020 Hb_013818_020 Hb_000282_110--Hb_013818_020 Hb_007416_250 Hb_007416_250 Hb_000282_110--Hb_007416_250 Hb_013405_240 Hb_013405_240 Hb_000282_110--Hb_013405_240 Hb_003208_010 Hb_003208_010 Hb_000282_110--Hb_003208_010 Hb_000762_050 Hb_000762_050 Hb_000282_110--Hb_000762_050 Hb_003251_010 Hb_003251_010 Hb_000282_110--Hb_003251_010 Hb_013818_020--Hb_007416_250 Hb_013818_020--Hb_013405_240 Hb_013818_020--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_013818_020--Hb_000003_530 Hb_013818_020--Hb_003208_010 Hb_007416_250--Hb_013405_240 Hb_000243_190 Hb_000243_190 Hb_007416_250--Hb_000243_190 Hb_000029_150 Hb_000029_150 Hb_007416_250--Hb_000029_150 Hb_007416_250--Hb_000762_050 Hb_013405_240--Hb_000243_190 Hb_013405_240--Hb_000029_150 Hb_016334_010 Hb_016334_010 Hb_013405_240--Hb_016334_010 Hb_003208_010--Hb_003251_010 Hb_000977_260 Hb_000977_260 Hb_003208_010--Hb_000977_260 Hb_000398_110 Hb_000398_110 Hb_003208_010--Hb_000398_110 Hb_000893_040 Hb_000893_040 Hb_003208_010--Hb_000893_040 Hb_000762_050--Hb_000003_530 Hb_004116_030 Hb_004116_030 Hb_000762_050--Hb_004116_030 Hb_000762_050--Hb_016334_010 Hb_002161_010 Hb_002161_010 Hb_000762_050--Hb_002161_010 Hb_003251_010--Hb_000977_260 Hb_003251_010--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_003251_010--Hb_008489_030 Hb_003251_010--Hb_000398_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 14.3858 6.70732 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0416076 0 0 0 77.2597

CAGE analysis