Hb_000283_110

Information

Type -
Description -
Location Contig283: 116826-118479
Sequence    

Annotation

kegg
ID egr:104415427
description probable prefoldin subunit 4
nr
ID XP_012089277.1
description PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
swissprot
ID Q9M4B5
description Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=AIP3 PE=1 SV=3
trembl
ID A0A059B7E7
description Prefoldin subunit 4 OS=Eucalyptus grandis GN=EUGRSUZ_H04324 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable prefoldin subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29601: 110420-116188 , PASA_asmbl_29604: 116902-118609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000283_110 0.0 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
2 Hb_003226_210 0.056376772 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
3 Hb_003893_050 0.0598061367 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
4 Hb_002431_050 0.060778132 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
5 Hb_001638_260 0.0630025205 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
6 Hb_000029_200 0.0738975597 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
7 Hb_000441_190 0.073920846 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
8 Hb_010672_060 0.0739841036 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
9 Hb_015175_030 0.0744618962 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
10 Hb_000574_480 0.0763015183 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
11 Hb_000340_140 0.0766809436 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
12 Hb_000086_550 0.0780633506 - - Os02g0814700 [Oryza sativa Japonica Group]
13 Hb_000173_220 0.0785162311 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
14 Hb_001842_040 0.0790200075 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
15 Hb_001505_020 0.0791132309 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
16 Hb_000364_020 0.0797642511 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
17 Hb_003455_040 0.0800219521 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
18 Hb_002713_070 0.081169508 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
19 Hb_000136_170 0.0814402436 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
20 Hb_001433_050 0.0817170996 - - 60S ribosomal protein L18, putative [Ricinus communis]

Gene co-expression network

sample Hb_000283_110 Hb_000283_110 Hb_003226_210 Hb_003226_210 Hb_000283_110--Hb_003226_210 Hb_003893_050 Hb_003893_050 Hb_000283_110--Hb_003893_050 Hb_002431_050 Hb_002431_050 Hb_000283_110--Hb_002431_050 Hb_001638_260 Hb_001638_260 Hb_000283_110--Hb_001638_260 Hb_000029_200 Hb_000029_200 Hb_000283_110--Hb_000029_200 Hb_000441_190 Hb_000441_190 Hb_000283_110--Hb_000441_190 Hb_001214_160 Hb_001214_160 Hb_003226_210--Hb_001214_160 Hb_006816_530 Hb_006816_530 Hb_003226_210--Hb_006816_530 Hb_002660_030 Hb_002660_030 Hb_003226_210--Hb_002660_030 Hb_000134_070 Hb_000134_070 Hb_003226_210--Hb_000134_070 Hb_000363_480 Hb_000363_480 Hb_003226_210--Hb_000363_480 Hb_005063_050 Hb_005063_050 Hb_003893_050--Hb_005063_050 Hb_003893_050--Hb_002431_050 Hb_003203_040 Hb_003203_040 Hb_003893_050--Hb_003203_040 Hb_010672_060 Hb_010672_060 Hb_003893_050--Hb_010672_060 Hb_003893_050--Hb_000029_200 Hb_002431_050--Hb_010672_060 Hb_002830_020 Hb_002830_020 Hb_002431_050--Hb_002830_020 Hb_007416_020 Hb_007416_020 Hb_002431_050--Hb_007416_020 Hb_029584_060 Hb_029584_060 Hb_002431_050--Hb_029584_060 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150 Hb_000545_150 Hb_000545_150 Hb_001638_260--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_001638_260--Hb_001818_020 Hb_002864_050 Hb_002864_050 Hb_000029_200--Hb_002864_050 Hb_000510_110 Hb_000510_110 Hb_000029_200--Hb_000510_110 Hb_001314_100 Hb_001314_100 Hb_000029_200--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_000029_200--Hb_012573_070 Hb_007416_030 Hb_007416_030 Hb_000029_200--Hb_007416_030 Hb_001842_040 Hb_001842_040 Hb_000441_190--Hb_001842_040 Hb_000441_190--Hb_003893_050 Hb_001461_010 Hb_001461_010 Hb_000441_190--Hb_001461_010 Hb_003994_040 Hb_003994_040 Hb_000441_190--Hb_003994_040 Hb_000023_340 Hb_000023_340 Hb_000441_190--Hb_000023_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.0288 32.2005 31.5412 78.5117 66.0181 110.433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
162.416 279.504 119.183 48.1864 44.5302

CAGE analysis