Hb_000284_110

Information

Type -
Description -
Location Contig284: 166678-167806
Sequence    

Annotation

kegg
ID rcu:RCOM_0759490
description bromodomain-containing protein, putative
nr
ID XP_012066661.1
description PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00235 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29725: 168532-179699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_110 0.0 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
2 Hb_024714_100 0.0893221177 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
3 Hb_011689_020 0.0905300127 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_000045_090 0.0944810331 - - PREDICTED: syntaxin-31 [Jatropha curcas]
5 Hb_002616_050 0.0945626722 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
6 Hb_000395_170 0.095085149 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
7 Hb_000166_110 0.0951169508 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
8 Hb_071736_010 0.0952044702 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
9 Hb_004072_020 0.0957276165 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
10 Hb_003766_040 0.096611655 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_021409_020 0.0966620383 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
12 Hb_001124_080 0.0972283776 - - RecName: Full=Acyl carrier protein 2, chloroplastic; Short=ACP; Flags: Precursor [Cuphea lanceolata]
13 Hb_039837_010 0.0975958157 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
14 Hb_005883_050 0.0976097549 - - PREDICTED: transportin-3 [Jatropha curcas]
15 Hb_001266_080 0.0976303429 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
16 Hb_000056_260 0.0989394603 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
17 Hb_143398_010 0.1003611756 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
18 Hb_148644_010 0.1015727226 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_006921_030 0.1021077255 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
20 Hb_003665_060 0.1030978018 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]

Gene co-expression network

sample Hb_000284_110 Hb_000284_110 Hb_024714_100 Hb_024714_100 Hb_000284_110--Hb_024714_100 Hb_011689_020 Hb_011689_020 Hb_000284_110--Hb_011689_020 Hb_000045_090 Hb_000045_090 Hb_000284_110--Hb_000045_090 Hb_002616_050 Hb_002616_050 Hb_000284_110--Hb_002616_050 Hb_000395_170 Hb_000395_170 Hb_000284_110--Hb_000395_170 Hb_000166_110 Hb_000166_110 Hb_000284_110--Hb_000166_110 Hb_004072_020 Hb_004072_020 Hb_024714_100--Hb_004072_020 Hb_001998_230 Hb_001998_230 Hb_024714_100--Hb_001998_230 Hb_004182_040 Hb_004182_040 Hb_024714_100--Hb_004182_040 Hb_001789_070 Hb_001789_070 Hb_024714_100--Hb_001789_070 Hb_000529_190 Hb_000529_190 Hb_024714_100--Hb_000529_190 Hb_012799_160 Hb_012799_160 Hb_024714_100--Hb_012799_160 Hb_005839_060 Hb_005839_060 Hb_011689_020--Hb_005839_060 Hb_002805_070 Hb_002805_070 Hb_011689_020--Hb_002805_070 Hb_000703_220 Hb_000703_220 Hb_011689_020--Hb_000703_220 Hb_011689_020--Hb_000166_110 Hb_005679_050 Hb_005679_050 Hb_011689_020--Hb_005679_050 Hb_002774_060 Hb_002774_060 Hb_000045_090--Hb_002774_060 Hb_009557_070 Hb_009557_070 Hb_000045_090--Hb_009557_070 Hb_000329_030 Hb_000329_030 Hb_000045_090--Hb_000329_030 Hb_004545_060 Hb_004545_060 Hb_000045_090--Hb_004545_060 Hb_143398_010 Hb_143398_010 Hb_000045_090--Hb_143398_010 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_000363_500 Hb_000363_500 Hb_002616_050--Hb_000363_500 Hb_000023_140 Hb_000023_140 Hb_002616_050--Hb_000023_140 Hb_002616_050--Hb_004072_020 Hb_005063_040 Hb_005063_040 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020 Hb_003175_010 Hb_003175_010 Hb_000395_170--Hb_003175_010 Hb_000926_280 Hb_000926_280 Hb_000395_170--Hb_000926_280 Hb_148912_010 Hb_148912_010 Hb_000395_170--Hb_148912_010 Hb_048937_040 Hb_048937_040 Hb_000395_170--Hb_048937_040 Hb_000089_220 Hb_000089_220 Hb_000395_170--Hb_000089_220 Hb_004109_090 Hb_004109_090 Hb_000395_170--Hb_004109_090 Hb_000166_110--Hb_000889_020 Hb_002054_040 Hb_002054_040 Hb_000166_110--Hb_002054_040 Hb_000166_110--Hb_005839_060 Hb_004370_030 Hb_004370_030 Hb_000166_110--Hb_004370_030 Hb_001124_160 Hb_001124_160 Hb_000166_110--Hb_001124_160 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.6814 0.922006 1.94582 2.93955 2.85356 7.20316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.23098 3.74975 4.00904 2.77637 2.04239

CAGE analysis