Hb_000284_160

Information

Type -
Description -
Location Contig284: 199690-206137
Sequence    

Annotation

kegg
ID ath:AT4G14370
description TIR-NBS-LRR class disease resistance protein
nr
ID XP_012071383.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04974 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_160 0.0 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_027751_030 0.1812820207 - - -
3 Hb_000603_240 0.1881887859 - - -
4 Hb_026766_010 0.2002782405 - - -
5 Hb_027751_040 0.2455691889 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
6 Hb_000614_330 0.2578513535 - - hypothetical protein POPTR_0008s18070g [Populus trichocarpa]
7 Hb_001993_020 0.2583102947 - - hypothetical protein JCGZ_02641 [Jatropha curcas]
8 Hb_002094_020 0.2650565124 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
9 Hb_002843_190 0.2792531846 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
10 Hb_004584_010 0.2937247129 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_031862_050 0.2977342659 - - Cell division cycle protein, putative [Ricinus communis]
12 Hb_002007_290 0.3037110254 - - -
13 Hb_003745_010 0.3080660299 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
14 Hb_003992_120 0.3167867417 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
15 Hb_001135_230 0.3176606136 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
16 Hb_007849_030 0.3179243203 - - l-allo-threonine aldolase, putative [Ricinus communis]
17 Hb_000463_060 0.3246623657 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
18 Hb_000699_020 0.3248830695 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
19 Hb_001230_010 0.3293392092 - - -
20 Hb_000002_390 0.3311827553 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000284_160 Hb_000284_160 Hb_027751_030 Hb_027751_030 Hb_000284_160--Hb_027751_030 Hb_000603_240 Hb_000603_240 Hb_000284_160--Hb_000603_240 Hb_026766_010 Hb_026766_010 Hb_000284_160--Hb_026766_010 Hb_027751_040 Hb_027751_040 Hb_000284_160--Hb_027751_040 Hb_000614_330 Hb_000614_330 Hb_000284_160--Hb_000614_330 Hb_001993_020 Hb_001993_020 Hb_000284_160--Hb_001993_020 Hb_027751_030--Hb_027751_040 Hb_002843_190 Hb_002843_190 Hb_027751_030--Hb_002843_190 Hb_002094_020 Hb_002094_020 Hb_027751_030--Hb_002094_020 Hb_027751_030--Hb_026766_010 Hb_001230_010 Hb_001230_010 Hb_027751_030--Hb_001230_010 Hb_000603_240--Hb_027751_040 Hb_000603_240--Hb_027751_030 Hb_000603_240--Hb_026766_010 Hb_003335_070 Hb_003335_070 Hb_000603_240--Hb_003335_070 Hb_000603_240--Hb_002843_190 Hb_003992_120 Hb_003992_120 Hb_026766_010--Hb_003992_120 Hb_004584_010 Hb_004584_010 Hb_026766_010--Hb_004584_010 Hb_026766_010--Hb_000614_330 Hb_003745_010 Hb_003745_010 Hb_027751_040--Hb_003745_010 Hb_027751_040--Hb_002843_190 Hb_012662_010 Hb_012662_010 Hb_027751_040--Hb_012662_010 Hb_027751_040--Hb_001993_020 Hb_003756_010 Hb_003756_010 Hb_027751_040--Hb_003756_010 Hb_000614_330--Hb_027751_030 Hb_000614_330--Hb_002843_190 Hb_000614_330--Hb_027751_040 Hb_000538_150 Hb_000538_150 Hb_000614_330--Hb_000538_150 Hb_001993_020--Hb_012662_010 Hb_000002_390 Hb_000002_390 Hb_001993_020--Hb_000002_390 Hb_000500_310 Hb_000500_310 Hb_001993_020--Hb_000500_310 Hb_000523_020 Hb_000523_020 Hb_001993_020--Hb_000523_020 Hb_002477_230 Hb_002477_230 Hb_001993_020--Hb_002477_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08978 0.0723081 0 0 0.0371551 0.0943404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.662627 0.236961 0.0891461 0.00945455 0

CAGE analysis