Hb_000284_170

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig284: 214216-221638
Sequence    

Annotation

kegg
ID vvi:100248194
description TMV resistance protein N-like
nr
ID XP_012068501.1
description PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067L1F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03179 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29730: 220233-220470 , PASA_asmbl_29731: 220233-223092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_170 0.0 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
2 Hb_033327_010 0.1259964579 - - SYM8 [Pisum sativum]
3 Hb_001472_140 0.1488287226 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
4 Hb_000594_110 0.1505110123 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
5 Hb_000532_150 0.150540617 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
6 Hb_005048_120 0.1531843158 - - -
7 Hb_094437_050 0.1543709009 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
8 Hb_012272_010 0.1550187414 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_001329_080 0.1645102631 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
10 Hb_010142_040 0.1679946877 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
11 Hb_001357_280 0.1709276594 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
12 Hb_062226_150 0.1743443679 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
13 Hb_002233_080 0.1757524573 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
14 Hb_002400_040 0.1763669226 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
15 Hb_000892_030 0.1770529006 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_008406_030 0.1776455118 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
17 Hb_032920_040 0.1777985647 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
18 Hb_001019_020 0.1778937255 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001787_070 0.1789698235 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
20 Hb_000047_010 0.1798431443 - - PREDICTED: expansin-like A1 [Jatropha curcas]

Gene co-expression network

sample Hb_000284_170 Hb_000284_170 Hb_033327_010 Hb_033327_010 Hb_000284_170--Hb_033327_010 Hb_001472_140 Hb_001472_140 Hb_000284_170--Hb_001472_140 Hb_000594_110 Hb_000594_110 Hb_000284_170--Hb_000594_110 Hb_000532_150 Hb_000532_150 Hb_000284_170--Hb_000532_150 Hb_005048_120 Hb_005048_120 Hb_000284_170--Hb_005048_120 Hb_094437_050 Hb_094437_050 Hb_000284_170--Hb_094437_050 Hb_007120_010 Hb_007120_010 Hb_033327_010--Hb_007120_010 Hb_033327_010--Hb_000594_110 Hb_033327_010--Hb_005048_120 Hb_000284_180 Hb_000284_180 Hb_033327_010--Hb_000284_180 Hb_010142_040 Hb_010142_040 Hb_033327_010--Hb_010142_040 Hb_001329_080 Hb_001329_080 Hb_001472_140--Hb_001329_080 Hb_000836_210 Hb_000836_210 Hb_001472_140--Hb_000836_210 Hb_004297_080 Hb_004297_080 Hb_001472_140--Hb_004297_080 Hb_008406_030 Hb_008406_030 Hb_001472_140--Hb_008406_030 Hb_002875_070 Hb_002875_070 Hb_001472_140--Hb_002875_070 Hb_005408_080 Hb_005408_080 Hb_001472_140--Hb_005408_080 Hb_041895_040 Hb_041895_040 Hb_000594_110--Hb_041895_040 Hb_102437_010 Hb_102437_010 Hb_000594_110--Hb_102437_010 Hb_000340_560 Hb_000340_560 Hb_000594_110--Hb_000340_560 Hb_002311_150 Hb_002311_150 Hb_000594_110--Hb_002311_150 Hb_002233_080 Hb_002233_080 Hb_000594_110--Hb_002233_080 Hb_001514_250 Hb_001514_250 Hb_000532_150--Hb_001514_250 Hb_001269_090 Hb_001269_090 Hb_000532_150--Hb_001269_090 Hb_012743_010 Hb_012743_010 Hb_000532_150--Hb_012743_010 Hb_113676_010 Hb_113676_010 Hb_000532_150--Hb_113676_010 Hb_000172_230 Hb_000172_230 Hb_000532_150--Hb_000172_230 Hb_002936_030 Hb_002936_030 Hb_005048_120--Hb_002936_030 Hb_012272_010 Hb_012272_010 Hb_005048_120--Hb_012272_010 Hb_010721_010 Hb_010721_010 Hb_005048_120--Hb_010721_010 Hb_001247_160 Hb_001247_160 Hb_005048_120--Hb_001247_160 Hb_005048_120--Hb_094437_050 Hb_007904_290 Hb_007904_290 Hb_005048_120--Hb_007904_290 Hb_002498_250 Hb_002498_250 Hb_094437_050--Hb_002498_250 Hb_001019_020 Hb_001019_020 Hb_094437_050--Hb_001019_020 Hb_000892_030 Hb_000892_030 Hb_094437_050--Hb_000892_030 Hb_005725_280 Hb_005725_280 Hb_094437_050--Hb_005725_280 Hb_002400_040 Hb_002400_040 Hb_094437_050--Hb_002400_040 Hb_000047_010 Hb_000047_010 Hb_094437_050--Hb_000047_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.160813 4.06348 2.42352 3.80584 0.179224 0.210492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.413312 0.292694 0 0.103433 0.551072

CAGE analysis