Hb_000284_180

Information

Type -
Description -
Location Contig284: 223493-226627
Sequence    

Annotation

kegg
ID pxb:103957775
description TMV resistance protein N-like
nr
ID KCW85027.1
description hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
swissprot
ID Q5N941
description Probable ion channel POLLUX OS=Oryza sativa subsp. japonica GN=Os01g0870100 PE=2 SV=1
trembl
ID A0A059D379
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01865 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29731: 220233-223092 , PASA_asmbl_29734: 225912-226535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_180 0.0 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
2 Hb_000045_140 0.1285352694 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
3 Hb_007120_010 0.1374160797 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
4 Hb_001989_060 0.139016616 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
5 Hb_033327_010 0.1511694821 - - SYM8 [Pisum sativum]
6 Hb_181824_010 0.1523398697 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_000819_040 0.1539661583 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000059_260 0.1618134979 - - PREDICTED: LOW QUALITY PROTEIN: peroxidase 60 [Jatropha curcas]
9 Hb_003226_080 0.1656352026 - - PREDICTED: RING-H2 finger protein ATL5-like [Jatropha curcas]
10 Hb_010126_030 0.1660095179 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
11 Hb_009040_010 0.1738798804 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
12 Hb_010589_130 0.1745716111 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
13 Hb_000283_100 0.1754052779 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
14 Hb_015481_010 0.1815856151 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
15 Hb_002445_130 0.1816554605 - - Disease resistance protein RGA2, putative [Ricinus communis]
16 Hb_000373_250 0.1819945609 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
17 Hb_004712_160 0.1822828073 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
18 Hb_181810_010 0.1829699822 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
19 Hb_001999_170 0.1849987318 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
20 Hb_029622_080 0.1852216141 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]

Gene co-expression network

sample Hb_000284_180 Hb_000284_180 Hb_000045_140 Hb_000045_140 Hb_000284_180--Hb_000045_140 Hb_007120_010 Hb_007120_010 Hb_000284_180--Hb_007120_010 Hb_001989_060 Hb_001989_060 Hb_000284_180--Hb_001989_060 Hb_033327_010 Hb_033327_010 Hb_000284_180--Hb_033327_010 Hb_181824_010 Hb_181824_010 Hb_000284_180--Hb_181824_010 Hb_000819_040 Hb_000819_040 Hb_000284_180--Hb_000819_040 Hb_000045_140--Hb_181824_010 Hb_000532_030 Hb_000532_030 Hb_000045_140--Hb_000532_030 Hb_000283_100 Hb_000283_100 Hb_000045_140--Hb_000283_100 Hb_010126_030 Hb_010126_030 Hb_000045_140--Hb_010126_030 Hb_000045_140--Hb_001989_060 Hb_000045_140--Hb_007120_010 Hb_000373_250 Hb_000373_250 Hb_007120_010--Hb_000373_250 Hb_007120_010--Hb_001989_060 Hb_000805_040 Hb_000805_040 Hb_007120_010--Hb_000805_040 Hb_001863_270 Hb_001863_270 Hb_007120_010--Hb_001863_270 Hb_002498_250 Hb_002498_250 Hb_007120_010--Hb_002498_250 Hb_001989_060--Hb_000283_100 Hb_001989_060--Hb_010126_030 Hb_011930_120 Hb_011930_120 Hb_001989_060--Hb_011930_120 Hb_004586_130 Hb_004586_130 Hb_001989_060--Hb_004586_130 Hb_000680_180 Hb_000680_180 Hb_001989_060--Hb_000680_180 Hb_000284_170 Hb_000284_170 Hb_033327_010--Hb_000284_170 Hb_033327_010--Hb_007120_010 Hb_000594_110 Hb_000594_110 Hb_033327_010--Hb_000594_110 Hb_005048_120 Hb_005048_120 Hb_033327_010--Hb_005048_120 Hb_010142_040 Hb_010142_040 Hb_033327_010--Hb_010142_040 Hb_005568_060 Hb_005568_060 Hb_181824_010--Hb_005568_060 Hb_033149_020 Hb_033149_020 Hb_181824_010--Hb_033149_020 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_016404_010 Hb_016404_010 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010 Hb_000819_040--Hb_000045_140 Hb_000230_210 Hb_000230_210 Hb_000819_040--Hb_000230_210 Hb_000819_040--Hb_181824_010 Hb_000340_060 Hb_000340_060 Hb_000819_040--Hb_000340_060 Hb_181810_010 Hb_181810_010 Hb_000819_040--Hb_181810_010 Hb_003375_080 Hb_003375_080 Hb_000819_040--Hb_003375_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.691418 24.0048 10.4441 5.99271 1.18336 2.34822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.488418 0.192128 0 0.335428 1.2571

CAGE analysis