Hb_000284_200

Information

Type -
Description -
Location Contig284: 243694-245936
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29736: 245320-246626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_200 0.0 - - -
2 Hb_002681_140 0.0768716271 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
3 Hb_000015_010 0.0853812086 - - -
4 Hb_000847_070 0.0885143761 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
5 Hb_004502_030 0.090450275 - - unknown [Populus trichocarpa]
6 Hb_006637_060 0.0936325994 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
7 Hb_001514_200 0.0937232526 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
8 Hb_000327_240 0.0940243136 - - PREDICTED: interaptin-like [Jatropha curcas]
9 Hb_002044_090 0.0949152311 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
10 Hb_001016_060 0.0967345422 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001623_580 0.0993418265 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
12 Hb_000692_260 0.1001092731 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
13 Hb_003605_070 0.1005017319 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
14 Hb_004374_010 0.1013011966 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
15 Hb_002026_110 0.1013510165 - - protein binding protein, putative [Ricinus communis]
16 Hb_011496_010 0.1022602584 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
17 Hb_000481_010 0.1023704824 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
18 Hb_001214_130 0.105409484 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
19 Hb_000345_560 0.1067205561 - - -
20 Hb_001437_300 0.1067390187 - - -

Gene co-expression network

sample Hb_000284_200 Hb_000284_200 Hb_002681_140 Hb_002681_140 Hb_000284_200--Hb_002681_140 Hb_000015_010 Hb_000015_010 Hb_000284_200--Hb_000015_010 Hb_000847_070 Hb_000847_070 Hb_000284_200--Hb_000847_070 Hb_004502_030 Hb_004502_030 Hb_000284_200--Hb_004502_030 Hb_006637_060 Hb_006637_060 Hb_000284_200--Hb_006637_060 Hb_001514_200 Hb_001514_200 Hb_000284_200--Hb_001514_200 Hb_002391_110 Hb_002391_110 Hb_002681_140--Hb_002391_110 Hb_000176_140 Hb_000176_140 Hb_002681_140--Hb_000176_140 Hb_002044_090 Hb_002044_090 Hb_002681_140--Hb_002044_090 Hb_127979_010 Hb_127979_010 Hb_002681_140--Hb_127979_010 Hb_011496_010 Hb_011496_010 Hb_002681_140--Hb_011496_010 Hb_004374_010 Hb_004374_010 Hb_000015_010--Hb_004374_010 Hb_000015_010--Hb_002044_090 Hb_000188_190 Hb_000188_190 Hb_000015_010--Hb_000188_190 Hb_000062_230 Hb_000062_230 Hb_000015_010--Hb_000062_230 Hb_160818_010 Hb_160818_010 Hb_000015_010--Hb_160818_010 Hb_004096_170 Hb_004096_170 Hb_000847_070--Hb_004096_170 Hb_001514_020 Hb_001514_020 Hb_000847_070--Hb_001514_020 Hb_000847_070--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_000847_070--Hb_007992_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_000847_070--Hb_006637_060 Hb_004502_030--Hb_007992_030 Hb_004502_030--Hb_001514_020 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_003638_140 Hb_003638_140 Hb_006637_060--Hb_003638_140 Hb_000176_110 Hb_000176_110 Hb_006637_060--Hb_000176_110 Hb_000003_090 Hb_000003_090 Hb_006637_060--Hb_000003_090 Hb_006637_060--Hb_004502_030 Hb_006637_060--Hb_002681_140 Hb_001514_200--Hb_000847_070 Hb_001514_200--Hb_004096_170 Hb_002377_050 Hb_002377_050 Hb_001514_200--Hb_002377_050 Hb_003605_070 Hb_003605_070 Hb_001514_200--Hb_003605_070 Hb_001514_200--Hb_002681_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9371 2.54183 1.11924 0.702211 10.9572 11.3401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.40514 6.54658 4.26538 1.6971 1.77589

CAGE analysis