Hb_000284_210

Information

Type -
Description -
Location Contig284: 246123-247430
Sequence    

Annotation

kegg
ID rcu:RCOM_0134680
description hypothetical protein
nr
ID XP_002533882.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID B9T6L3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0134680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29736: 245320-246626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000703_080 0.0612558282 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
3 Hb_004934_090 0.0736953557 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
4 Hb_002097_090 0.0742602082 - - Splicing factor 3A subunit, putative [Ricinus communis]
5 Hb_003994_240 0.0862257077 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
6 Hb_009620_040 0.0881978756 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
7 Hb_002046_040 0.0886482897 - - PREDICTED: topless-related protein 4 [Malus domestica]
8 Hb_000184_130 0.0892204994 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
9 Hb_003728_030 0.0900781823 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
10 Hb_033152_080 0.0909947706 - - RNA-binding protein Nova-1, putative [Ricinus communis]
11 Hb_000316_030 0.0919377901 - - zinc finger protein, putative [Ricinus communis]
12 Hb_009393_050 0.0926860688 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
13 Hb_000009_550 0.0934476018 - - hypothetical protein RCOM_0603640 [Ricinus communis]
14 Hb_007364_010 0.0938714686 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
15 Hb_000041_220 0.0960915827 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
16 Hb_033642_010 0.0961910467 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
17 Hb_000808_180 0.0964101825 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
18 Hb_000803_190 0.0964665867 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
19 Hb_000236_370 0.0966078449 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
20 Hb_001829_010 0.0980552643 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000284_210 Hb_000284_210 Hb_000703_080 Hb_000703_080 Hb_000284_210--Hb_000703_080 Hb_004934_090 Hb_004934_090 Hb_000284_210--Hb_004934_090 Hb_002097_090 Hb_002097_090 Hb_000284_210--Hb_002097_090 Hb_003994_240 Hb_003994_240 Hb_000284_210--Hb_003994_240 Hb_009620_040 Hb_009620_040 Hb_000284_210--Hb_009620_040 Hb_002046_040 Hb_002046_040 Hb_000284_210--Hb_002046_040 Hb_000703_080--Hb_002097_090 Hb_000703_080--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_000703_080--Hb_003728_030 Hb_001454_060 Hb_001454_060 Hb_000703_080--Hb_001454_060 Hb_000390_060 Hb_000390_060 Hb_000703_080--Hb_000390_060 Hb_004934_090--Hb_002097_090 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_004934_090--Hb_003994_240 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_002097_090--Hb_009620_040 Hb_002097_090--Hb_000803_300 Hb_001936_020 Hb_001936_020 Hb_003994_240--Hb_001936_020 Hb_003994_240--Hb_003728_030 Hb_001663_030 Hb_001663_030 Hb_003994_240--Hb_001663_030 Hb_004108_140 Hb_004108_140 Hb_003994_240--Hb_004108_140 Hb_003994_240--Hb_002030_030 Hb_000160_040 Hb_000160_040 Hb_009620_040--Hb_000160_040 Hb_000236_370 Hb_000236_370 Hb_009620_040--Hb_000236_370 Hb_009620_040--Hb_004934_090 Hb_000173_510 Hb_000173_510 Hb_009620_040--Hb_000173_510 Hb_009620_040--Hb_000645_150 Hb_000041_220 Hb_000041_220 Hb_002046_040--Hb_000041_220 Hb_000307_200 Hb_000307_200 Hb_002046_040--Hb_000307_200 Hb_025012_010 Hb_025012_010 Hb_002046_040--Hb_025012_010 Hb_000017_340 Hb_000017_340 Hb_002046_040--Hb_000017_340 Hb_000316_030 Hb_000316_030 Hb_002046_040--Hb_000316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1499 7.38519 1.3438 1.98595 10.6416 17.8135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.26646 7.77939 6.29732 5.77381 3.59407

CAGE analysis