Hb_000284_220

Information

Type -
Description -
Location Contig284: 247905-256874
Sequence    

Annotation

kegg
ID rcu:RCOM_0134670
description alpha/beta hydrolase domain containing protein 1,3, putative
nr
ID XP_002533881.1
description alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
swissprot
ID Q40863
description Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1
trembl
ID B9T6L2
description Alpha/beta hydrolase domain containing protein 1,3, putative OS=Ricinus communis GN=RCOM_0134670 PE=4 SV=1
Gene Ontology
ID GO:0016787
description embryogenesis-associated protein emb8-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29737: 246627-247142 , PASA_asmbl_29738: 248178-248598 , PASA_asmbl_29739: 252517-256916 , PASA_asmbl_29740: 250656-253833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_220 0.0 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
2 Hb_001117_110 0.1069268321 - - PREDICTED: dynamin-2A [Jatropha curcas]
3 Hb_007317_020 0.1073191884 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
4 Hb_005694_060 0.1087052982 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
5 Hb_005571_010 0.1102595032 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
6 Hb_005854_040 0.1109974136 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007313_040 0.1113538706 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
8 Hb_001473_170 0.115587228 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
9 Hb_000027_200 0.1167339049 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
10 Hb_000066_040 0.1169785552 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
11 Hb_015884_020 0.1179788071 - - PREDICTED: protein PIR [Jatropha curcas]
12 Hb_000157_140 0.1192226903 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_005914_040 0.1203224876 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
14 Hb_001998_220 0.1227426 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
15 Hb_102763_010 0.123797081 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
16 Hb_002311_130 0.1244466183 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
17 Hb_001504_060 0.1254549803 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
18 Hb_000510_190 0.1266460653 - - glutathione reductase [Hevea brasiliensis]
19 Hb_002150_020 0.1267132646 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_010381_020 0.127629942 - - Endosomal P24A protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000284_220 Hb_000284_220 Hb_001117_110 Hb_001117_110 Hb_000284_220--Hb_001117_110 Hb_007317_020 Hb_007317_020 Hb_000284_220--Hb_007317_020 Hb_005694_060 Hb_005694_060 Hb_000284_220--Hb_005694_060 Hb_005571_010 Hb_005571_010 Hb_000284_220--Hb_005571_010 Hb_005854_040 Hb_005854_040 Hb_000284_220--Hb_005854_040 Hb_007313_040 Hb_007313_040 Hb_000284_220--Hb_007313_040 Hb_001117_110--Hb_005694_060 Hb_030736_040 Hb_030736_040 Hb_001117_110--Hb_030736_040 Hb_015884_020 Hb_015884_020 Hb_001117_110--Hb_015884_020 Hb_116349_120 Hb_116349_120 Hb_001117_110--Hb_116349_120 Hb_106890_010 Hb_106890_010 Hb_001117_110--Hb_106890_010 Hb_000088_260 Hb_000088_260 Hb_001117_110--Hb_000088_260 Hb_007317_020--Hb_005854_040 Hb_000254_070 Hb_000254_070 Hb_007317_020--Hb_000254_070 Hb_000157_140 Hb_000157_140 Hb_007317_020--Hb_000157_140 Hb_098533_010 Hb_098533_010 Hb_007317_020--Hb_098533_010 Hb_010381_020 Hb_010381_020 Hb_007317_020--Hb_010381_020 Hb_001473_170 Hb_001473_170 Hb_007317_020--Hb_001473_170 Hb_005694_060--Hb_015884_020 Hb_000979_130 Hb_000979_130 Hb_005694_060--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_005694_060--Hb_000585_110 Hb_005694_060--Hb_030736_040 Hb_005694_060--Hb_116349_120 Hb_023988_030 Hb_023988_030 Hb_005571_010--Hb_023988_030 Hb_002150_020 Hb_002150_020 Hb_005571_010--Hb_002150_020 Hb_005571_010--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_005571_010--Hb_003355_010 Hb_005914_040 Hb_005914_040 Hb_005571_010--Hb_005914_040 Hb_055690_010 Hb_055690_010 Hb_005571_010--Hb_055690_010 Hb_000027_200 Hb_000027_200 Hb_005854_040--Hb_000027_200 Hb_002687_200 Hb_002687_200 Hb_005854_040--Hb_002687_200 Hb_021977_010 Hb_021977_010 Hb_005854_040--Hb_021977_010 Hb_001226_130 Hb_001226_130 Hb_005854_040--Hb_001226_130 Hb_005854_040--Hb_015884_020 Hb_002311_130 Hb_002311_130 Hb_007313_040--Hb_002311_130 Hb_001998_150 Hb_001998_150 Hb_007313_040--Hb_001998_150 Hb_007313_040--Hb_001473_170 Hb_000167_120 Hb_000167_120 Hb_007313_040--Hb_000167_120 Hb_003517_070 Hb_003517_070 Hb_007313_040--Hb_003517_070 Hb_000025_500 Hb_000025_500 Hb_007313_040--Hb_000025_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.216976 2.31766 2.73598 3.72242 1.56736 0.952381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.512713 1.06354 1.11184 3.07216 4.87861

CAGE analysis