Hb_000286_170

Information

Type -
Description -
Location Contig286: 150159-160388
Sequence    

Annotation

kegg
ID rcu:RCOM_0407820
description Membralin, putative
nr
ID XP_012071324.1
description PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
swissprot
ID Q8CIV2
description Membralin OS=Mus musculus GN=Tmem259 PE=1 SV=2
trembl
ID A0A067L433
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05011 PE=4 SV=1
Gene Ontology
ID GO:0005783
description s3 self-incompatibility locus-linked pollen protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29878: 150261-160325
cDNA
(Sanger)
(ID:Location)		 025_B19.ab1: 150261-151822

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000286_170 0.0 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
2 Hb_067193_010 0.0830188138 - - -
3 Hb_000030_060 0.0883811919 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
4 Hb_007558_070 0.0950253103 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
5 Hb_010417_060 0.0983190345 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
6 Hb_000406_230 0.1015250706 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
7 Hb_000062_470 0.1030061887 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
8 Hb_002374_320 0.1041496172 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
9 Hb_000191_130 0.1107121645 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
10 Hb_001031_040 0.1110723658 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000917_160 0.1125516262 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
12 Hb_001307_080 0.1126280115 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
13 Hb_002044_170 0.1129927896 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
14 Hb_000343_110 0.1139648158 - - Heat shock 70 kDa protein, putative [Ricinus communis]
15 Hb_003040_020 0.1140871676 - - PREDICTED: protein cereblon [Jatropha curcas]
16 Hb_004429_160 0.1144011866 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
17 Hb_001221_150 0.1145718225 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
18 Hb_000010_360 0.1171236616 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
19 Hb_000856_140 0.1188561159 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
20 Hb_032920_130 0.1190714972 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000286_170 Hb_000286_170 Hb_067193_010 Hb_067193_010 Hb_000286_170--Hb_067193_010 Hb_000030_060 Hb_000030_060 Hb_000286_170--Hb_000030_060 Hb_007558_070 Hb_007558_070 Hb_000286_170--Hb_007558_070 Hb_010417_060 Hb_010417_060 Hb_000286_170--Hb_010417_060 Hb_000406_230 Hb_000406_230 Hb_000286_170--Hb_000406_230 Hb_000062_470 Hb_000062_470 Hb_000286_170--Hb_000062_470 Hb_001221_150 Hb_001221_150 Hb_067193_010--Hb_001221_150 Hb_005731_090 Hb_005731_090 Hb_067193_010--Hb_005731_090 Hb_000856_140 Hb_000856_140 Hb_067193_010--Hb_000856_140 Hb_001307_080 Hb_001307_080 Hb_067193_010--Hb_001307_080 Hb_004453_110 Hb_004453_110 Hb_067193_010--Hb_004453_110 Hb_003040_020 Hb_003040_020 Hb_067193_010--Hb_003040_020 Hb_000365_030 Hb_000365_030 Hb_000030_060--Hb_000365_030 Hb_006618_090 Hb_006618_090 Hb_000030_060--Hb_006618_090 Hb_000030_060--Hb_010417_060 Hb_000030_060--Hb_001307_080 Hb_033554_020 Hb_033554_020 Hb_000030_060--Hb_033554_020 Hb_007558_070--Hb_000406_230 Hb_000191_130 Hb_000191_130 Hb_007558_070--Hb_000191_130 Hb_023344_010 Hb_023344_010 Hb_007558_070--Hb_023344_010 Hb_000398_020 Hb_000398_020 Hb_007558_070--Hb_000398_020 Hb_000917_160 Hb_000917_160 Hb_007558_070--Hb_000917_160 Hb_000010_360 Hb_000010_360 Hb_007558_070--Hb_000010_360 Hb_010417_060--Hb_000062_470 Hb_032920_130 Hb_032920_130 Hb_010417_060--Hb_032920_130 Hb_010417_060--Hb_000917_160 Hb_002044_170 Hb_002044_170 Hb_010417_060--Hb_002044_170 Hb_010417_060--Hb_000191_130 Hb_000176_130 Hb_000176_130 Hb_010417_060--Hb_000176_130 Hb_000406_230--Hb_023344_010 Hb_000406_230--Hb_000010_360 Hb_000960_050 Hb_000960_050 Hb_000406_230--Hb_000960_050 Hb_000406_230--Hb_000191_130 Hb_000406_230--Hb_000917_160 Hb_000062_470--Hb_000191_130 Hb_000062_470--Hb_000917_160 Hb_000661_200 Hb_000661_200 Hb_000062_470--Hb_000661_200 Hb_004429_160 Hb_004429_160 Hb_000062_470--Hb_004429_160 Hb_007813_030 Hb_007813_030 Hb_000062_470--Hb_007813_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.37329 20.2123 12.2468 9.61172 33.1541 20.2313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.26149 5.26808 4.04423 14.9103 11.4346

CAGE analysis