Hb_000288_090

Information

Type -
Description -
Location Contig288: 124578-130370
Sequence    

Annotation

kegg
ID vvi:100245597
description uncharacterized LOC100245597
nr
ID CBI28115.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A067KBE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13248 PE=4 SV=1
Gene Ontology
ID GO:0005829
description serine arginine repetitive matrix protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000288_090 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000181_270 0.1037405227 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000365_210 0.105465557 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
4 Hb_006970_130 0.1164091132 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
5 Hb_000003_060 0.1271700197 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
6 Hb_000260_650 0.1355730438 - - PREDICTED: protein PFC0760c [Jatropha curcas]
7 Hb_004920_050 0.136741519 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
8 Hb_000960_090 0.1403270968 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001501_070 0.1403592907 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
10 Hb_093458_020 0.1418367411 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
11 Hb_038044_010 0.1421727218 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
12 Hb_011485_030 0.1424074214 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
13 Hb_002007_280 0.1441889342 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
14 Hb_001780_080 0.1446442007 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
15 Hb_007545_110 0.149430139 - - catalytic, putative [Ricinus communis]
16 Hb_005901_030 0.1495600243 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
17 Hb_000566_130 0.1507164582 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
18 Hb_010180_030 0.1511431326 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
19 Hb_002400_050 0.1522863772 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
20 Hb_001478_020 0.1526834675 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000288_090 Hb_000288_090 Hb_000181_270 Hb_000181_270 Hb_000288_090--Hb_000181_270 Hb_000365_210 Hb_000365_210 Hb_000288_090--Hb_000365_210 Hb_006970_130 Hb_006970_130 Hb_000288_090--Hb_006970_130 Hb_000003_060 Hb_000003_060 Hb_000288_090--Hb_000003_060 Hb_000260_650 Hb_000260_650 Hb_000288_090--Hb_000260_650 Hb_004920_050 Hb_004920_050 Hb_000288_090--Hb_004920_050 Hb_011485_030 Hb_011485_030 Hb_000181_270--Hb_011485_030 Hb_000181_270--Hb_004920_050 Hb_002518_200 Hb_002518_200 Hb_000181_270--Hb_002518_200 Hb_000529_040 Hb_000529_040 Hb_000181_270--Hb_000529_040 Hb_000890_020 Hb_000890_020 Hb_000181_270--Hb_000890_020 Hb_001501_070 Hb_001501_070 Hb_000365_210--Hb_001501_070 Hb_001761_010 Hb_001761_010 Hb_000365_210--Hb_001761_010 Hb_008406_100 Hb_008406_100 Hb_000365_210--Hb_008406_100 Hb_001584_360 Hb_001584_360 Hb_000365_210--Hb_001584_360 Hb_000028_530 Hb_000028_530 Hb_000365_210--Hb_000028_530 Hb_005271_140 Hb_005271_140 Hb_006970_130--Hb_005271_140 Hb_004007_130 Hb_004007_130 Hb_006970_130--Hb_004007_130 Hb_000190_220 Hb_000190_220 Hb_006970_130--Hb_000190_220 Hb_004531_080 Hb_004531_080 Hb_006970_130--Hb_004531_080 Hb_004968_040 Hb_004968_040 Hb_006970_130--Hb_004968_040 Hb_093458_020 Hb_093458_020 Hb_000003_060--Hb_093458_020 Hb_000003_060--Hb_004968_040 Hb_010436_080 Hb_010436_080 Hb_000003_060--Hb_010436_080 Hb_000003_060--Hb_006970_130 Hb_000057_190 Hb_000057_190 Hb_000003_060--Hb_000057_190 Hb_000960_090 Hb_000960_090 Hb_000260_650--Hb_000960_090 Hb_005901_030 Hb_005901_030 Hb_000260_650--Hb_005901_030 Hb_004155_020 Hb_004155_020 Hb_000260_650--Hb_004155_020 Hb_000668_060 Hb_000668_060 Hb_000260_650--Hb_000668_060 Hb_000260_650--Hb_006970_130 Hb_004920_050--Hb_011485_030 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_004920_050--Hb_000890_020 Hb_004920_050--Hb_002518_200 Hb_000566_130 Hb_000566_130 Hb_004920_050--Hb_000566_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.987209 1.39815 13.8275 5.79169 0.609151 0.315761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.880861 0.558304 0.58293 2.83597 0.690123

CAGE analysis