Hb_000289_080

Information

Type -
Description -
Location Contig289: 125926-126254
Sequence    

Annotation

kegg
ID rcu:RCOM_2059740
description hypothetical protein
nr
ID XP_002535277.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TAK8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2059740 PE=4 SV=1
Gene Ontology
ID GO:0005739
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30167: 125495-127263 , PASA_asmbl_30169: 126874-127191
cDNA
(Sanger)
(ID:Location)		 007_J15.ab1: 125668-127261 , 012_F10.ab1: 125756-127261 , 036_J21.ab1: 125756-127261 , 044_K20.ab1: 125762-127261 , 046_J17.ab1: 125756-127261

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000289_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006995_010 0.1094794069 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
3 Hb_003029_100 0.1226372363 - - -
4 Hb_000086_190 0.1343031561 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
5 Hb_000204_020 0.1506243698 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
6 Hb_000668_020 0.1507946801 - - -
7 Hb_003656_150 0.1521082796 - - -
8 Hb_012675_080 0.1633781581 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
9 Hb_166480_010 0.1635266779 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
10 Hb_075745_010 0.1640801018 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
11 Hb_010368_030 0.1647340113 - - BnaA07g35570D [Brassica napus]
12 Hb_124141_010 0.1859282586 - - plant origin recognition complex subunit, putative [Ricinus communis]
13 Hb_006198_090 0.1861500219 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
14 Hb_007763_050 0.1919016885 - - hypothetical protein L484_012752 [Morus notabilis]
15 Hb_000261_360 0.1977066664 - - unknown [Lotus japonicus]
16 Hb_168737_010 0.2039144569 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001396_250 0.2075993266 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
18 Hb_000120_190 0.2076153558 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
19 Hb_008277_030 0.2104361747 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
20 Hb_000265_130 0.2135484356 - - -

Gene co-expression network

sample Hb_000289_080 Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_000289_080--Hb_006995_010 Hb_003029_100 Hb_003029_100 Hb_000289_080--Hb_003029_100 Hb_000086_190 Hb_000086_190 Hb_000289_080--Hb_000086_190 Hb_000204_020 Hb_000204_020 Hb_000289_080--Hb_000204_020 Hb_000668_020 Hb_000668_020 Hb_000289_080--Hb_000668_020 Hb_003656_150 Hb_003656_150 Hb_000289_080--Hb_003656_150 Hb_006995_010--Hb_003656_150 Hb_006995_010--Hb_003029_100 Hb_012675_080 Hb_012675_080 Hb_006995_010--Hb_012675_080 Hb_006995_010--Hb_000086_190 Hb_006198_090 Hb_006198_090 Hb_006995_010--Hb_006198_090 Hb_003029_100--Hb_003656_150 Hb_003029_100--Hb_000086_190 Hb_124141_010 Hb_124141_010 Hb_003029_100--Hb_124141_010 Hb_003029_100--Hb_006198_090 Hb_000086_190--Hb_000668_020 Hb_010368_030 Hb_010368_030 Hb_000086_190--Hb_010368_030 Hb_000086_190--Hb_012675_080 Hb_001396_250 Hb_001396_250 Hb_000086_190--Hb_001396_250 Hb_000204_020--Hb_003029_100 Hb_000204_020--Hb_006995_010 Hb_005933_010 Hb_005933_010 Hb_000204_020--Hb_005933_010 Hb_169170_010 Hb_169170_010 Hb_000204_020--Hb_169170_010 Hb_008277_030 Hb_008277_030 Hb_000204_020--Hb_008277_030 Hb_001584_320 Hb_001584_320 Hb_000668_020--Hb_001584_320 Hb_000668_020--Hb_012675_080 Hb_000668_020--Hb_006995_010 Hb_000668_020--Hb_003029_100 Hb_007188_030 Hb_007188_030 Hb_003656_150--Hb_007188_030 Hb_003656_150--Hb_012675_080 Hb_003656_150--Hb_006198_090 Hb_003030_040 Hb_003030_040 Hb_003656_150--Hb_003030_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3794 6.71881 9.80629 566.268 36.7211 1342.87
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
294.778 300.113 62.5925 37.8865 4.92918

CAGE analysis