Hb_000289_110

Information

Type -
Description -
Location Contig289: 192374-205338
Sequence    

Annotation

kegg
ID mus:103985227
description cysteine synthase-like
nr
ID XP_009401140.1
description PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
swissprot
ID O81155
description Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1
trembl
ID M0SZ91
description Cysteine synthase OS=Musa acuminata subsp. malaccensis PE=3 SV=1
Gene Ontology
ID GO:0004124
description cysteine chloroplastic chromoplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30170: 195865-196200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000289_110 0.0 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
2 Hb_001006_020 0.0592581032 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
3 Hb_001366_180 0.0611322708 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
4 Hb_002811_130 0.0701164328 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
5 Hb_005144_050 0.0759828573 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
6 Hb_002014_030 0.0773304611 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
7 Hb_000337_050 0.077748374 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
8 Hb_006274_030 0.0809364285 - - F-box and wd40 domain protein, putative [Ricinus communis]
9 Hb_000159_130 0.0828938457 - - RNA binding protein, putative [Ricinus communis]
10 Hb_000053_020 0.0868045986 - - F-box and wd40 domain protein, putative [Ricinus communis]
11 Hb_003020_260 0.0902756267 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
12 Hb_011360_070 0.090822506 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
13 Hb_000483_300 0.0913492267 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
14 Hb_003768_030 0.0926949178 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
15 Hb_000421_220 0.0955879981 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
16 Hb_018133_090 0.0958284086 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000479_250 0.0965129202 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
18 Hb_000061_210 0.0983009552 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
19 Hb_008453_030 0.0988378313 - - Thioredoxin superfamily protein [Theobroma cacao]
20 Hb_002183_060 0.0995296085 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000289_110 Hb_000289_110 Hb_001006_020 Hb_001006_020 Hb_000289_110--Hb_001006_020 Hb_001366_180 Hb_001366_180 Hb_000289_110--Hb_001366_180 Hb_002811_130 Hb_002811_130 Hb_000289_110--Hb_002811_130 Hb_005144_050 Hb_005144_050 Hb_000289_110--Hb_005144_050 Hb_002014_030 Hb_002014_030 Hb_000289_110--Hb_002014_030 Hb_000337_050 Hb_000337_050 Hb_000289_110--Hb_000337_050 Hb_001006_020--Hb_005144_050 Hb_000159_130 Hb_000159_130 Hb_001006_020--Hb_000159_130 Hb_001006_020--Hb_001366_180 Hb_002183_060 Hb_002183_060 Hb_001006_020--Hb_002183_060 Hb_000421_220 Hb_000421_220 Hb_001006_020--Hb_000421_220 Hb_006274_030 Hb_006274_030 Hb_001366_180--Hb_006274_030 Hb_001366_180--Hb_005144_050 Hb_000479_250 Hb_000479_250 Hb_001366_180--Hb_000479_250 Hb_006478_020 Hb_006478_020 Hb_001366_180--Hb_006478_020 Hb_001366_180--Hb_002014_030 Hb_011716_130 Hb_011716_130 Hb_002811_130--Hb_011716_130 Hb_002811_130--Hb_002014_030 Hb_005847_060 Hb_005847_060 Hb_002811_130--Hb_005847_060 Hb_002811_130--Hb_006274_030 Hb_000061_210 Hb_000061_210 Hb_002811_130--Hb_000061_210 Hb_025098_010 Hb_025098_010 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_002289_080 Hb_002289_080 Hb_005144_050--Hb_002289_080 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020 Hb_002014_030--Hb_006274_030 Hb_017987_030 Hb_017987_030 Hb_002014_030--Hb_017987_030 Hb_018272_020 Hb_018272_020 Hb_002014_030--Hb_018272_020 Hb_018133_090 Hb_018133_090 Hb_000337_050--Hb_018133_090 Hb_003086_080 Hb_003086_080 Hb_000337_050--Hb_003086_080 Hb_000337_050--Hb_001366_180 Hb_000337_050--Hb_005144_050 Hb_003020_260 Hb_003020_260 Hb_000337_050--Hb_003020_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.492577 0.327121 0.467712 0.775926 0.473222 0.832814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15875 1.1873 0.880369 0.726625 1.42648

CAGE analysis