Hb_000291_020

Information

Type -
Description -
Location Contig291: 9660-9995
Sequence    

Annotation

kegg
ID pop:POPTR_0019s06080g
description POPTRDRAFT_780375; hypothetical protein
nr
ID XP_002325889.1
description hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
swissprot
ID Q8GX29
description F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1
trembl
ID B9IPY9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s06080g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_020 0.0 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
2 Hb_002787_100 0.0351856285 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
3 Hb_124207_010 0.0376060034 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000523_060 0.0867896031 - - -
5 Hb_012553_010 0.0951784698 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
6 Hb_166257_010 0.1011920119 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
7 Hb_002481_070 0.1223198352 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
8 Hb_003752_130 0.1374352566 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
9 Hb_000878_150 0.1428778443 - - Gibberellin receptor GID1, putative [Ricinus communis]
10 Hb_012702_020 0.1443937625 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
11 Hb_015912_010 0.1452898767 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000035_300 0.1461993532 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001268_070 0.1485324152 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000070_140 0.1556017561 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_000101_060 0.1573034247 - - -
16 Hb_000510_350 0.1576646754 - - Putative polyprotein [Oryza sativa Japonica Group]
17 Hb_003636_010 0.1730337421 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
18 Hb_001021_110 0.1747646993 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
19 Hb_000512_080 0.1760226619 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000408_010 0.1774095976 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]

Gene co-expression network

sample Hb_000291_020 Hb_000291_020 Hb_002787_100 Hb_002787_100 Hb_000291_020--Hb_002787_100 Hb_124207_010 Hb_124207_010 Hb_000291_020--Hb_124207_010 Hb_000523_060 Hb_000523_060 Hb_000291_020--Hb_000523_060 Hb_012553_010 Hb_012553_010 Hb_000291_020--Hb_012553_010 Hb_166257_010 Hb_166257_010 Hb_000291_020--Hb_166257_010 Hb_002481_070 Hb_002481_070 Hb_000291_020--Hb_002481_070 Hb_002787_100--Hb_000523_060 Hb_002787_100--Hb_124207_010 Hb_002787_100--Hb_002481_070 Hb_002787_100--Hb_012553_010 Hb_000878_150 Hb_000878_150 Hb_002787_100--Hb_000878_150 Hb_124207_010--Hb_012553_010 Hb_124207_010--Hb_166257_010 Hb_124207_010--Hb_000523_060 Hb_001268_070 Hb_001268_070 Hb_124207_010--Hb_001268_070 Hb_000523_060--Hb_002481_070 Hb_000523_060--Hb_000878_150 Hb_005545_090 Hb_005545_090 Hb_000523_060--Hb_005545_090 Hb_012553_010--Hb_001268_070 Hb_012553_010--Hb_166257_010 Hb_000070_140 Hb_000070_140 Hb_012553_010--Hb_000070_140 Hb_009297_010 Hb_009297_010 Hb_166257_010--Hb_009297_010 Hb_000101_060 Hb_000101_060 Hb_166257_010--Hb_000101_060 Hb_166257_010--Hb_001268_070 Hb_000408_010 Hb_000408_010 Hb_002481_070--Hb_000408_010 Hb_002481_070--Hb_005545_090 Hb_001998_190 Hb_001998_190 Hb_002481_070--Hb_001998_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.02331 0.211179 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.404661 0

CAGE analysis