Hb_000291_050

Information

Type transcription factor
Description TF Family: PHD
Location Contig291: 37996-51393
Sequence    

Annotation

kegg
ID rcu:RCOM_1032890
description phd finger protein, putative
nr
ID XP_012078148.1
description PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
swissprot
ID Q6IE82
description Protein Jade-3 OS=Mus musculus GN=Jade3 PE=1 SV=1
trembl
ID A0A067KLT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12031 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30491: 38047-47599 , PASA_asmbl_30492: 38047-47599 , PASA_asmbl_30493: 47772-51230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_050 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
2 Hb_002725_120 0.0630059239 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
3 Hb_005779_080 0.0644254251 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
4 Hb_000165_250 0.0645026139 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
5 Hb_006649_050 0.064509656 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
6 Hb_005496_130 0.0669112915 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
7 Hb_001004_060 0.0724343305 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
8 Hb_000029_050 0.0724461357 - - expressed protein, putative [Ricinus communis]
9 Hb_167498_010 0.0753905015 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
10 Hb_009767_110 0.0755509907 - - -
11 Hb_004800_080 0.0755922737 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
12 Hb_027346_010 0.0766442549 - - -
13 Hb_015807_070 0.0771083421 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
14 Hb_000035_290 0.0778115557 - - RNA recognition motif-containing family protein [Populus trichocarpa]
15 Hb_002234_170 0.0783346643 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
16 Hb_004225_050 0.0784457841 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
17 Hb_001369_730 0.078541062 - - F5O11.10, putative isoform 1 [Theobroma cacao]
18 Hb_006816_430 0.0789704518 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
19 Hb_000920_060 0.0790519059 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
20 Hb_001205_230 0.0792926416 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]

Gene co-expression network

sample Hb_000291_050 Hb_000291_050 Hb_002725_120 Hb_002725_120 Hb_000291_050--Hb_002725_120 Hb_005779_080 Hb_005779_080 Hb_000291_050--Hb_005779_080 Hb_000165_250 Hb_000165_250 Hb_000291_050--Hb_000165_250 Hb_006649_050 Hb_006649_050 Hb_000291_050--Hb_006649_050 Hb_005496_130 Hb_005496_130 Hb_000291_050--Hb_005496_130 Hb_001004_060 Hb_001004_060 Hb_000291_050--Hb_001004_060 Hb_009767_110 Hb_009767_110 Hb_002725_120--Hb_009767_110 Hb_002725_120--Hb_006649_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_002725_120--Hb_005496_130 Hb_002725_120--Hb_000165_250 Hb_005489_020 Hb_005489_020 Hb_005779_080--Hb_005489_020 Hb_000029_050 Hb_000029_050 Hb_005779_080--Hb_000029_050 Hb_001123_260 Hb_001123_260 Hb_005779_080--Hb_001123_260 Hb_001227_030 Hb_001227_030 Hb_005779_080--Hb_001227_030 Hb_005993_050 Hb_005993_050 Hb_005779_080--Hb_005993_050 Hb_000165_250--Hb_000029_050 Hb_004221_020 Hb_004221_020 Hb_000165_250--Hb_004221_020 Hb_000165_250--Hb_006649_050 Hb_017358_030 Hb_017358_030 Hb_000165_250--Hb_017358_030 Hb_000165_250--Hb_005496_130 Hb_006649_050--Hb_009767_110 Hb_004225_050 Hb_004225_050 Hb_006649_050--Hb_004225_050 Hb_001198_100 Hb_001198_100 Hb_006649_050--Hb_001198_100 Hb_008554_130 Hb_008554_130 Hb_005496_130--Hb_008554_130 Hb_005496_130--Hb_009767_110 Hb_005496_130--Hb_000029_050 Hb_000329_710 Hb_000329_710 Hb_001004_060--Hb_000329_710 Hb_000792_010 Hb_000792_010 Hb_001004_060--Hb_000792_010 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001999_290 Hb_001999_290 Hb_001004_060--Hb_001999_290 Hb_001205_230 Hb_001205_230 Hb_001004_060--Hb_001205_230 Hb_005736_020 Hb_005736_020 Hb_001004_060--Hb_005736_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2912 23.0939 11.3039 9.31342 20.5069 24.5916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2955 18.5809 22.5228 14.0589 22.5137

CAGE analysis