Hb_000291_190

Information

Type transcription factor
Description TF Family: bZIP
Location Contig291: 150672-157883
Sequence    

Annotation

kegg
ID rcu:RCOM_1033270
description Transcription factor TGA7, putative
nr
ID XP_012078125.1
description PREDICTED: transcription factor TGA3 [Jatropha curcas]
swissprot
ID Q93ZE2
description Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1
trembl
ID B9RJD3
description Transcription factor TGA7, putative OS=Ricinus communis GN=RCOM_1033270 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tga4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30518: 150606-158103 , PASA_asmbl_30519: 155867-157878
cDNA
(Sanger)
(ID:Location)		 029_H22.ab1: 152791-158099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_190 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
2 Hb_000865_080 0.0558758613 - - arsenite-resistance protein, putative [Ricinus communis]
3 Hb_000224_060 0.0564174565 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
4 Hb_000025_360 0.0718538471 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
5 Hb_006586_050 0.0812424548 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
6 Hb_003878_140 0.0816647915 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
7 Hb_001616_050 0.0826568838 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
8 Hb_000059_210 0.082822388 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000140_080 0.0848889899 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
10 Hb_003935_030 0.0853250698 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
11 Hb_001059_100 0.0857317072 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
12 Hb_023827_040 0.0871568783 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
13 Hb_000521_260 0.0879821554 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
14 Hb_000046_010 0.0882526101 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
15 Hb_004734_060 0.0916470916 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
16 Hb_001220_030 0.0923483538 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
17 Hb_000032_320 0.0925895899 - - protein binding protein, putative [Ricinus communis]
18 Hb_076693_020 0.0925940133 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
19 Hb_000077_070 0.0934060619 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
20 Hb_000510_310 0.0935144655 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000291_190 Hb_000291_190 Hb_000865_080 Hb_000865_080 Hb_000291_190--Hb_000865_080 Hb_000224_060 Hb_000224_060 Hb_000291_190--Hb_000224_060 Hb_000025_360 Hb_000025_360 Hb_000291_190--Hb_000025_360 Hb_006586_050 Hb_006586_050 Hb_000291_190--Hb_006586_050 Hb_003878_140 Hb_003878_140 Hb_000291_190--Hb_003878_140 Hb_001616_050 Hb_001616_050 Hb_000291_190--Hb_001616_050 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000865_080--Hb_000025_360 Hb_000224_060--Hb_003878_140 Hb_000140_080 Hb_000140_080 Hb_000224_060--Hb_000140_080 Hb_000224_060--Hb_000025_360 Hb_000224_060--Hb_001616_050 Hb_045793_010 Hb_045793_010 Hb_000025_360--Hb_045793_010 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500 Hb_000523_040 Hb_000523_040 Hb_006586_050--Hb_000523_040 Hb_000510_310 Hb_000510_310 Hb_006586_050--Hb_000510_310 Hb_000059_210 Hb_000059_210 Hb_006586_050--Hb_000059_210 Hb_000521_260 Hb_000521_260 Hb_006586_050--Hb_000521_260 Hb_000032_320 Hb_000032_320 Hb_006586_050--Hb_000032_320 Hb_164010_060 Hb_164010_060 Hb_006586_050--Hb_164010_060 Hb_002977_010 Hb_002977_010 Hb_003878_140--Hb_002977_010 Hb_003878_140--Hb_001616_050 Hb_001584_170 Hb_001584_170 Hb_003878_140--Hb_001584_170 Hb_003878_140--Hb_000865_080 Hb_017075_030 Hb_017075_030 Hb_003878_140--Hb_017075_030 Hb_007229_040 Hb_007229_040 Hb_001616_050--Hb_007229_040 Hb_001946_300 Hb_001946_300 Hb_001616_050--Hb_001946_300 Hb_001616_050--Hb_002977_010 Hb_032202_240 Hb_032202_240 Hb_001616_050--Hb_032202_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3592 24.5062 8.41598 7.08479 21.4441 24.7566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7971 11.7288 13.337 11.7831 3.08774

CAGE analysis