Hb_000291_200

Information

Type -
Description -
Location Contig291: 183889-189313
Sequence    

Annotation

kegg
ID pop:POPTR_0005s16410g
description POPTRDRAFT_716554; hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30520: 183384-189803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_200 0.0 - - -
2 Hb_005348_080 0.1125161199 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
3 Hb_000252_040 0.11347296 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
4 Hb_002662_100 0.1241219286 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
5 Hb_102864_010 0.1301616057 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
6 Hb_001366_230 0.1313560389 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008016_010 0.1355606592 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
8 Hb_001804_040 0.1378297428 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011224_080 0.1384401013 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
10 Hb_000831_060 0.1385799198 - - 17.5 kd heat shock family protein [Populus trichocarpa]
11 Hb_001842_070 0.1417152463 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
12 Hb_014834_120 0.14207189 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
13 Hb_001191_100 0.1448582778 - - F-actin capping protein beta subunit [Populus trichocarpa]
14 Hb_000313_380 0.1459813026 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000012_450 0.1463805586 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
16 Hb_000152_430 0.1474012693 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
17 Hb_000933_140 0.1477296839 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
18 Hb_098709_010 0.1502380626 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
19 Hb_001754_150 0.1505644096 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
20 Hb_001104_120 0.1526144638 - - -

Gene co-expression network

sample Hb_000291_200 Hb_000291_200 Hb_005348_080 Hb_005348_080 Hb_000291_200--Hb_005348_080 Hb_000252_040 Hb_000252_040 Hb_000291_200--Hb_000252_040 Hb_002662_100 Hb_002662_100 Hb_000291_200--Hb_002662_100 Hb_102864_010 Hb_102864_010 Hb_000291_200--Hb_102864_010 Hb_001366_230 Hb_001366_230 Hb_000291_200--Hb_001366_230 Hb_008016_010 Hb_008016_010 Hb_000291_200--Hb_008016_010 Hb_000831_060 Hb_000831_060 Hb_005348_080--Hb_000831_060 Hb_005348_080--Hb_008016_010 Hb_073973_110 Hb_073973_110 Hb_005348_080--Hb_073973_110 Hb_001804_040 Hb_001804_040 Hb_005348_080--Hb_001804_040 Hb_098709_010 Hb_098709_010 Hb_005348_080--Hb_098709_010 Hb_001191_100 Hb_001191_100 Hb_000252_040--Hb_001191_100 Hb_000252_040--Hb_001366_230 Hb_005000_290 Hb_005000_290 Hb_000252_040--Hb_005000_290 Hb_183963_020 Hb_183963_020 Hb_000252_040--Hb_183963_020 Hb_000787_070 Hb_000787_070 Hb_000252_040--Hb_000787_070 Hb_000313_380 Hb_000313_380 Hb_002662_100--Hb_000313_380 Hb_001366_220 Hb_001366_220 Hb_002662_100--Hb_001366_220 Hb_000085_310 Hb_000085_310 Hb_002662_100--Hb_000085_310 Hb_000809_040 Hb_000809_040 Hb_002662_100--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002662_100--Hb_009026_050 Hb_002662_100--Hb_001366_230 Hb_030620_010 Hb_030620_010 Hb_102864_010--Hb_030620_010 Hb_004223_230 Hb_004223_230 Hb_102864_010--Hb_004223_230 Hb_102864_010--Hb_001804_040 Hb_102864_010--Hb_001366_230 Hb_000340_430 Hb_000340_430 Hb_102864_010--Hb_000340_430 Hb_007451_030 Hb_007451_030 Hb_102864_010--Hb_007451_030 Hb_001366_230--Hb_001191_100 Hb_025087_010 Hb_025087_010 Hb_001366_230--Hb_025087_010 Hb_001366_230--Hb_183963_020 Hb_001366_230--Hb_000313_380 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_001437_040 Hb_001437_040 Hb_008016_010--Hb_001437_040 Hb_000933_140 Hb_000933_140 Hb_008016_010--Hb_000933_140 Hb_000189_530 Hb_000189_530 Hb_008016_010--Hb_000189_530 Hb_008016_010--Hb_098709_010 Hb_000366_100 Hb_000366_100 Hb_008016_010--Hb_000366_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03221 0.485229 0.158684 0.521052 5.88438 5.4413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64611 7.02204 4.0888 0.310336 1.35125

CAGE analysis