Hb_000291_220

Information

Type -
Description -
Location Contig291: 192175-200564
Sequence    

Annotation

kegg
ID rcu:RCOM_1033310
description electron transporter, putative
nr
ID XP_012078120.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
swissprot
ID Q5AW24
description Vacuolar membrane-associated protein iml1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=iml1 PE=3 SV=1
trembl
ID B9RJD7
description Electron transporter, putative OS=Ricinus communis GN=RCOM_1033310 PE=4 SV=1
Gene Ontology
ID GO:0005622
description electron disulfide oxidoreductases

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30521: 192388-200560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_220 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
2 Hb_000058_100 0.0766105879 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
3 Hb_002043_190 0.0785007809 - - rwd domain-containing protein, putative [Ricinus communis]
4 Hb_004182_040 0.0797063351 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
5 Hb_015746_010 0.0812878686 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
6 Hb_007017_030 0.081532413 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
7 Hb_001828_190 0.0845467572 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
8 Hb_003126_050 0.0858439986 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
9 Hb_000103_180 0.0858551301 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
10 Hb_000085_160 0.0862035566 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
11 Hb_001771_090 0.0866400776 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
12 Hb_004048_070 0.0869598332 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
13 Hb_000023_220 0.0872990845 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
14 Hb_001811_050 0.0873665489 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
15 Hb_000521_050 0.0880404793 - - PREDICTED: major facilitator superfamily domain-containing protein 12-like isoform X1 [Jatropha curcas]
16 Hb_027472_150 0.0891515367 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
17 Hb_000025_470 0.0891861224 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
18 Hb_008406_190 0.0900672625 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
19 Hb_000103_090 0.0905781673 - - PREDICTED: protein RDM1 [Jatropha curcas]
20 Hb_000529_190 0.0906680398 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000291_220 Hb_000291_220 Hb_000058_100 Hb_000058_100 Hb_000291_220--Hb_000058_100 Hb_002043_190 Hb_002043_190 Hb_000291_220--Hb_002043_190 Hb_004182_040 Hb_004182_040 Hb_000291_220--Hb_004182_040 Hb_015746_010 Hb_015746_010 Hb_000291_220--Hb_015746_010 Hb_007017_030 Hb_007017_030 Hb_000291_220--Hb_007017_030 Hb_001828_190 Hb_001828_190 Hb_000291_220--Hb_001828_190 Hb_001199_020 Hb_001199_020 Hb_000058_100--Hb_001199_020 Hb_003813_130 Hb_003813_130 Hb_000058_100--Hb_003813_130 Hb_000076_120 Hb_000076_120 Hb_000058_100--Hb_000076_120 Hb_027472_150 Hb_027472_150 Hb_000058_100--Hb_027472_150 Hb_004055_030 Hb_004055_030 Hb_000058_100--Hb_004055_030 Hb_004310_130 Hb_004310_130 Hb_000058_100--Hb_004310_130 Hb_005993_040 Hb_005993_040 Hb_002043_190--Hb_005993_040 Hb_002043_190--Hb_015746_010 Hb_002081_130 Hb_002081_130 Hb_002043_190--Hb_002081_130 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_002233_150 Hb_002233_150 Hb_002043_190--Hb_002233_150 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_003125_160 Hb_003125_160 Hb_004182_040--Hb_003125_160 Hb_000690_130 Hb_000690_130 Hb_004182_040--Hb_000690_130 Hb_003665_060 Hb_003665_060 Hb_004182_040--Hb_003665_060 Hb_003728_080 Hb_003728_080 Hb_004182_040--Hb_003728_080 Hb_001350_010 Hb_001350_010 Hb_004182_040--Hb_001350_010 Hb_000327_120 Hb_000327_120 Hb_015746_010--Hb_000327_120 Hb_004048_070 Hb_004048_070 Hb_015746_010--Hb_004048_070 Hb_000853_170 Hb_000853_170 Hb_015746_010--Hb_000853_170 Hb_001571_040 Hb_001571_040 Hb_015746_010--Hb_001571_040 Hb_000061_370 Hb_000061_370 Hb_015746_010--Hb_000061_370 Hb_002893_080 Hb_002893_080 Hb_007017_030--Hb_002893_080 Hb_001279_150 Hb_001279_150 Hb_007017_030--Hb_001279_150 Hb_008406_190 Hb_008406_190 Hb_007017_030--Hb_008406_190 Hb_007017_030--Hb_001828_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_001090_040 Hb_001090_040 Hb_001828_190--Hb_001090_040 Hb_003525_010 Hb_003525_010 Hb_001828_190--Hb_003525_010 Hb_002226_070 Hb_002226_070 Hb_001828_190--Hb_002226_070 Hb_007691_030 Hb_007691_030 Hb_001828_190--Hb_007691_030 Hb_000092_170 Hb_000092_170 Hb_001828_190--Hb_000092_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.712 3.19303 5.45351 7.46296 12.205 13.6345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7187 12.6046 9.36617 11.9402 5.04893

CAGE analysis