Hb_000291_240

Information

Type -
Description -
Location Contig291: 210914-211132
Sequence    

Annotation

kegg
ID pop:POPTR_0005s16430g
description POPTRDRAFT_651341; hypothetical protein
nr
ID XP_002307402.1
description hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H777
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16430g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_240 0.0 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
2 Hb_000991_060 0.0862070663 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
3 Hb_025557_080 0.0909546862 transcription factor TF Family: zf-HD -
4 Hb_001454_350 0.0941800641 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
5 Hb_000243_240 0.0993180922 - - cytochrome P450 family protein [Populus trichocarpa]
6 Hb_145975_010 0.1019375023 - - cytochrome P450, putative [Ricinus communis]
7 Hb_001141_430 0.1022107781 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
8 Hb_000188_040 0.1028627039 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
9 Hb_006252_070 0.1098514711 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
10 Hb_000244_290 0.1098898537 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
11 Hb_001343_060 0.1161108795 - - Cytochrome P450 [Theobroma cacao]
12 Hb_027411_030 0.1174595361 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_011344_110 0.1181279836 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
14 Hb_004757_010 0.1196379152 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
15 Hb_025557_070 0.1202778687 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
16 Hb_001157_120 0.123596172 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
17 Hb_000327_350 0.1238630926 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
18 Hb_006618_100 0.1251781146 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
19 Hb_004449_100 0.1264108668 - - -
20 Hb_001722_110 0.1265346997 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000291_240 Hb_000291_240 Hb_000991_060 Hb_000991_060 Hb_000291_240--Hb_000991_060 Hb_025557_080 Hb_025557_080 Hb_000291_240--Hb_025557_080 Hb_001454_350 Hb_001454_350 Hb_000291_240--Hb_001454_350 Hb_000243_240 Hb_000243_240 Hb_000291_240--Hb_000243_240 Hb_145975_010 Hb_145975_010 Hb_000291_240--Hb_145975_010 Hb_001141_430 Hb_001141_430 Hb_000291_240--Hb_001141_430 Hb_006252_070 Hb_006252_070 Hb_000991_060--Hb_006252_070 Hb_027411_030 Hb_027411_030 Hb_000991_060--Hb_027411_030 Hb_001296_010 Hb_001296_010 Hb_000991_060--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_000991_060--Hb_013399_060 Hb_004757_010 Hb_004757_010 Hb_000991_060--Hb_004757_010 Hb_025557_070 Hb_025557_070 Hb_025557_080--Hb_025557_070 Hb_025161_060 Hb_025161_060 Hb_025557_080--Hb_025161_060 Hb_000188_040 Hb_000188_040 Hb_025557_080--Hb_000188_040 Hb_188281_020 Hb_188281_020 Hb_025557_080--Hb_188281_020 Hb_002031_020 Hb_002031_020 Hb_025557_080--Hb_002031_020 Hb_004158_040 Hb_004158_040 Hb_001454_350--Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_001454_350--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_001454_350--Hb_001722_110 Hb_001454_350--Hb_000188_040 Hb_010217_020 Hb_010217_020 Hb_001454_350--Hb_010217_020 Hb_009421_060 Hb_009421_060 Hb_001454_350--Hb_009421_060 Hb_001157_120 Hb_001157_120 Hb_000243_240--Hb_001157_120 Hb_000816_170 Hb_000816_170 Hb_000243_240--Hb_000816_170 Hb_000244_290 Hb_000244_290 Hb_000243_240--Hb_000244_290 Hb_000243_240--Hb_001141_430 Hb_001343_060 Hb_001343_060 Hb_000243_240--Hb_001343_060 Hb_011344_110 Hb_011344_110 Hb_000243_240--Hb_011344_110 Hb_006618_100 Hb_006618_100 Hb_145975_010--Hb_006618_100 Hb_145975_010--Hb_004757_010 Hb_145975_010--Hb_001343_060 Hb_145975_010--Hb_027411_030 Hb_145975_010--Hb_001141_430 Hb_001269_430 Hb_001269_430 Hb_145975_010--Hb_001269_430 Hb_001141_430--Hb_001343_060 Hb_159791_010 Hb_159791_010 Hb_001141_430--Hb_159791_010 Hb_001141_430--Hb_004757_010 Hb_001141_430--Hb_011344_110 Hb_001141_430--Hb_000816_170 Hb_001712_010 Hb_001712_010 Hb_001141_430--Hb_001712_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.498459 4.26159 1.21524 67.9231 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.62721 10.6594

CAGE analysis